Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g06f
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   141   4e-34
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.031
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024753-2|AAF60457.2|  561|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  141 bits (341), Expect = 4e-34
 Identities = 62/76 (81%), Positives = 70/76 (92%)
 Frame = +2

Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
           GKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2   GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61

Query: 569 PNSAIRKCVRVQLIKN 616
           PNSAIRKCVRVQLIKN
Sbjct: 62  PNSAIRKCVRVQLIKN 77


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 512 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 457 VRPSLFTTVVHVLTRRSYSSGFT*NC 380
           VRP + TTV+HV+ R    SG    C
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSGRAEQC 214


>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +3

Query: 165 CKNANMLCTHTRVSHGVDMIISW------CKMNLFPSYYGRVIYEVHQKLLRCYEGFKTK 326
           C N +  C H R  + ++M++ W      C M+ F  +    I+ V    LR   G   K
Sbjct: 26  CTNISNFCNHARDVYNIEMLLRWAIFIIPCCMSFFALFLNIYIFYVLIPNLRKMNGRSKK 85

Query: 327 IILF 338
             +F
Sbjct: 86  KYIF 89


>AC024753-2|AAF60457.2|  561|Caenorhabditis elegans Hypothetical
           protein Y23H5B.5 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 251 KQIHFTPRDYHVYAMADSGMRAQH 180
           K +HF+PR   V++MAD G   Q+
Sbjct: 133 KSVHFSPRGDTVFSMADDGKIKQY 156


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +2

Query: 383 ISGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFG--------GASHAKGIV 538
           +  K   +  + KH  H  +  + D  FKK   GT+W    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 539 LEKVGVEAKQPNSAIRK 589
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical
           protein Y50D4B.5 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 428 SRAYAPFVFLGVYLKLRCRRLSITNVYKT 342
           S  Y PF+FL  Y+ LR R  S  +  KT
Sbjct: 19  SNRYVPFIFLSKYVLLRSRSTSSHHSCKT 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,178
Number of Sequences: 27780
Number of extensions: 339969
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)