Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f23f
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    30   1.4  
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative transp...    28   5.7  
U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative transp...    28   5.7  

>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 243 VNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNN 64
           + +  RTR L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  N
Sbjct: 786 MRICARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTN 845

Query: 63  RANFILQEI 37
           R +  L+++
Sbjct: 846 RKDKSLKDL 854


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 333 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 157
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 156 LPIL--KALALSVDLGSATSLVDTATIAVNTN 67
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 486 IFLINNSRIYYEASLSFFSDCKL-LWQY 566
           +++  N R++Y+A +S  S C + LW+Y
Sbjct: 138 VWVYPNGRVWYDARISIVSSCNMDLWKY 165


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 489 FLINNSRIYYEASL---SFFSDCKLLWQYYK 572
           +L N+  +++  S+   SFF DCK  W  YK
Sbjct: 22  YLCNSCDLFFRRSMTPWSFFGDCKHNWDCYK 52


>Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 476 EFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKMLFAARSQTEDSR 339
           EF    + +KLR FA  +  Y F + Q    K  +FA  ++ + SR
Sbjct: 102 EFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSR 147


>U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 476 EFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKMLFAARSQTEDSR 339
           EF    + +KLR FA  +  Y F + Q    K  +FA  ++ + SR
Sbjct: 102 EFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSR 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,296
Number of Sequences: 27780
Number of extensions: 248281
Number of successful extensions: 617
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)