Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f20f
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             44   9e-05
11_01_0023 - 162079-162402                                             44   9e-05
01_05_0378 + 21628517-21628759                                         35   0.057
12_01_0474 + 3718846-3719097                                           31   0.54 
03_02_0738 - 10824121-10825572                                         27   8.7  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 27/94 (28%), Positives = 38/94 (40%)
 Frame = +1

Query: 163 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 342
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGAAAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 343 SXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 444
           +            MSL FI  V  LH++GK  R+
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 27/94 (28%), Positives = 38/94 (40%)
 Frame = +1

Query: 163 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 342
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGASAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 343 SXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 444
           +            MSL FI  V  LH++GK  R+
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 307 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 441
           G+  M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 441
           G+  M +FYT+++            MS+ F A V +LH++GK  R
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 388 ETSLKQELAPL*LQENHRYRTSTFLQNQHQCFGFWLQL 275
           E   +  L  L + + HR+    FL+N +   GFW  +
Sbjct: 330 EADDQSALVFLLVTQRHRWGAKVFLENSYNLHGFWADI 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,435,165
Number of Sequences: 37544
Number of extensions: 231012
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)