Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f18f
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    30   1.5  
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 491 FLINNSRIYYEASL---SFFSDCKLLWQYYK*ISNK 589
           +L N+  +++  S+   SFF DCK  W  YK  SN+
Sbjct: 22  YLCNSCDLFFRRSMTPWSFFGDCKHNWDCYKESSNR 57


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 244 VNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNN 65
           + +  RTR L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  N
Sbjct: 786 MRICARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTN 845

Query: 64  RANFILQEI 38
           R +  L+++
Sbjct: 846 RKDKSLKDL 854


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 334 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 158
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 157 LPIL--KALALSVDLGSATSLVDTATIAVNTN 68
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 334 KPTPPPVRRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEV-I 158
           +P PPPV R   +   P  ++ L R P  AV   +    +      ++ + +++S  V  
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415

Query: 157 LPIL--KALALSVDLGSATSLVDTATIAVNTN 68
            P++   + A+     +AT+ + T ++  NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 488 IFLINNSRIYYEASLSFFSDCKL-LWQY 568
           +++  N R++Y+A +S  S C + LW+Y
Sbjct: 138 VWVYPNGRVWYDARISIVSSCNMDLWKY 165


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 449 FLFFCLHKKFVLPIFLINNSRIYYEASLSFFSDCKLLWQYYK*ISNKNLDY 601
           FLFF   + F++P F+   +  Y    L       +LW +    S K+L Y
Sbjct: 213 FLFFIAFRAFIIPKFIFLETGSYVATGLFSAFHLTILWIHMNPKSLKSLYY 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,324
Number of Sequences: 27780
Number of extensions: 255954
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)