Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f17r
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    33   0.036
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.1  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.2  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +2

Query: 374 LGATMAGSATITGATLGPSATITGLGT-MMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 550
           L +++  SA+++ +++ P++ IT   T +   S+ ++  T  +S+    +GST +TG A 
Sbjct: 229 LPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSAT 288

Query: 551 AAS 559
            +S
Sbjct: 289 VSS 291


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -2

Query: 651 SKLPSSHPQST------SDPLVPGQLTPLVHILININDAASATPVESVEPEQS 511
           S LPSS P ST      S        TPL  +      +AS+TP+ SV    S
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANS 332


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 389 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSS 505
           AG  T+  G  LG     T LGT++  + MIT    GF +
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGA 238


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 371 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 550
           G     A +AT TG +L  +A   G  + M GSA  +    G   +   + +T +TG  L
Sbjct: 500 GANTNTATNATGTGGSLFGNANTAG--SNMFGSANSSTPGTGLFGSTQTNNATSNTGTGL 557

Query: 551 AAS 559
             S
Sbjct: 558 FGS 560


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  ILVNYISMVKSTCRRCHLVIFLYF 92
           ILVNY   ++  C RC  V + ++
Sbjct: 305 ILVNYCKSIRFRCFRCRRVEYFFY 328


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 403  DHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFFNI 510
            D+R Y    G  +  RYYD R++   G      +N+
Sbjct: 895  DNRHYQILQGFTFLYRYYDLRVNEGLGEKQEALYNL 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,889
Number of Sequences: 5004
Number of extensions: 28197
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)