Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f16r
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.0  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.2  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 718 QLHRLVYFYNINIVFHISFLTANE 647
           Q  R+ YFY+ N+V+  S  TA +
Sbjct: 359 QYSRIAYFYSYNVVYEASIQTATD 382


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 57   NIHNSNL*NISKTINTLIF 113
            N+HNSNL ++SK I+TL F
Sbjct: 3868 NVHNSNLDSLSK-ISTLFF 3885


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 YLNRFIPWDIFINDSFLMPEYSL 182
           +L  ++  + F+ D F+MP+Y+L
Sbjct: 82  FLKTYVEDESFVGDDFVMPKYTL 104


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 513 ITLLSHQIIKTIFLKSVMYYFTDLTNDLETTHQK 412
           + +LS ++ K   LK +++ +  LTN++E  HQK
Sbjct: 656 LKILSSKLYK---LKGIIFCYYALTNNIEGLHQK 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,874
Number of Sequences: 5004
Number of extensions: 57589
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)