Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f16f
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 107 2e-24
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 62 5e-11
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 57 2e-09
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 28 0.98
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 4.0
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 26 4.0
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 26 4.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 5.2
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 6.9
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 25 9.1
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 25 9.1
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 107 bits (256), Expect = 2e-24
Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 14/196 (7%)
Frame = +2
Query: 74 IRWGIVTAGKISHDFVNAFNSYP--NKGDQVIAAVAART---KPEEFAKLHNIPI---VF 229
I WG + AG I+ F P +K I AVA R + FAK H P +
Sbjct: 11 IHWGFLGAGSIAAVFAKDLVGVPERHKVQHEIVAVATRDSEHRASSFAKNHCAPCKPKAY 70
Query: 230 DSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCEKPLCLNYKQAESLIRFAKN 409
SY+ L + +++D+ YI + +P HY + KL L N K VLCEKPL +NY +A L+ A+
Sbjct: 71 GSYEELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELARA 130
Query: 410 KKLFLMEAVWSRFSPTYIAIEKEINSGKL-GDVMFVEVNFGV-----PIVTVDRLRKKEL 571
+ LF E W RF P A + ++ ++ GD + V+F + + RLR L
Sbjct: 131 RNLFFAEGFWIRFYPIVKAAKTLLHEDRVCGDHFRLFVDFSQDFRFRELPSESRLRTVSL 190
Query: 572 GGSSVMDIGIYTLQFA 619
G ++D+G+Y L ++
Sbjct: 191 GAGVLLDMGVYPLTWS 206
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 62.5 bits (145), Expect = 5e-11
Identities = 38/115 (33%), Positives = 58/115 (50%)
Frame = +2
Query: 173 AARTKPEEFAKLHNIPIVFDSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCE 352
A T+ + A N+ + + LA+SN I++ I HY + L GKHVLCE
Sbjct: 40 ATSTESKARAAFPNVKVYTKLDELLADSN-IELVVISLPPNVHYEVVSQALNAGKHVLCE 98
Query: 353 KPLCLNYKQAESLIRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMFVE 517
KP Y +A+ L AK+K L L RF ++ ++ I +G+LG+V+ E
Sbjct: 99 KPFTPTYGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQFE 153
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 57.2 bits (132), Expect = 2e-09
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +2
Query: 212 NIPIVFDSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCEKPLCLNYKQAESL 391
NI + + + LA+ N I++ + H I K L GKHV+CEKP Y++A+ L
Sbjct: 53 NILVYTNLDELLADVN-IELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKEL 111
Query: 392 IRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMFVEVNF 526
A++K L L R+ ++ +K I SG+LG V+ E +F
Sbjct: 112 YELAESKSLLLAIYQNRRWDGDFLTAKKIIESGRLGQVVEFESHF 156
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 143 NKGDQVIAAVAARTKPEEFAKLHNIPIV-FDSYKALAESNEID 268
+K + +I+AV KP+ +K+ NIP D+ A++E E +
Sbjct: 148 SKAESIISAVLGEEKPDPSSKVSNIPEENRDATSAISEGKETE 190
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -1
Query: 597 PMSITELPPNSFFLSLSTVTIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRN 418
P + E P + +L TIGTPK++ + S F + +S S+ + + +R+
Sbjct: 578 PPYLNENPLRALYL---IATIGTPKISRPELLSSVFHDFLSKSLTVNPKQRPSSGELLRH 634
Query: 417 SFL 409
FL
Sbjct: 635 PFL 637
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 456 PTLPLKKKSIPGNWE 500
P L ++KKS+ GNWE
Sbjct: 596 PFLHIRKKSVDGNWE 610
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 540 TIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRNS 415
TIG+ S+N++SP+ E + V ENL + + NS
Sbjct: 375 TIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNS 416
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 92 TAGKISHDFVNAFNSYPNKGDQVIAAVAARTKPEEF 199
TA K DF +A NSY +G+ + A + +F
Sbjct: 58 TAPKYDVDFTSALNSYKYEGETIPTKAAGESNKFDF 93
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 576 PPNSFFLSLSTVTIGTPKLTSTNITSPNFPELI 478
PP+S VTI P + TNI P+ +++
Sbjct: 175 PPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVL 207
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 323 LENGKHVLCEKPLCLNYKQAESLIRFAKNKKLFLMEAVWSRFSPTYIA 466
LENG + KPL +++ + S+ AK + EAV+ + +A
Sbjct: 146 LENGTVITATKPLLISHHRISSITSTAKWVLVIEKEAVFQTLTEEALA 193
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 199 KFFWLRSSGYCGYNLIPLVRI 137
KF WL+ + +C Y IPL I
Sbjct: 301 KFPWLKKNSFCLYLPIPLTSI 321
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 145 VRIAVESVNKIMADFSCGYDTPTYGHLKWI 56
VRIA+ + +++ D + Y P G +KWI
Sbjct: 46 VRIALVADPQLVDDLTYDYPRPLIGIVKWI 75
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 221 IVFDSYKALAESNEIDVAYIG--ALNPDHYNISKLF 322
+VF YK E+ ++ VA+IG L P H K F
Sbjct: 1 MVFADYKQRVENGDLAVAWIGRNKLIPLHIEAEKTF 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,736
Number of Sequences: 5004
Number of extensions: 57170
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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