Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f16f
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U58760-1|AAK31461.1|  244|Caenorhabditis elegans Interactor of f...    27   8.5  
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    27   8.5  

>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 314 KLFLENGKHVLCEKPLCLNYKQAESLIRFAKNKKLFLMEAVWSRFSP 454
           ++ +EN   +L E P+CL    A   I+F  N K+ +++ V ++FSP
Sbjct: 263 EVLMENSS-ILGENPICLG-DGANVAIKFGANPKIGILQEVKTKFSP 307


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 257 NEIDVAYIGALNPDHYNISKLFLENGKHVLCEKPLCLNY 373
           NE  V   G L  D  N+ K+F +    +LCEK L  NY
Sbjct: 133 NEFPVFISGNLELDTVNLPKMFHKPYSPLLCEKRLMPNY 171


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 343  SLRKTFVFELQTSREPNQVCEE*ETISNGSCLVEIFSHLHCH*K 474
            S  +  V ++ +++EPN +C       NG C+    +H  C  K
Sbjct: 3122 SSEEIVVGDVYSTQEPNNICANSTCGMNGQCVPRNMTHYTCECK 3165


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 343  SLRKTFVFELQTSREPNQVCEE*ETISNGSCLVEIFSHLHCH*K 474
            S  +  V ++ +++EPN +C       NG C+    +H  C  K
Sbjct: 3122 SSEEIVVGDVYSTQEPNNICANSTCGMNGQCVPRNMTHYTCECK 3165


>Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical
           protein ZK507.4 protein.
          Length = 206

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 287 AHQYKPHQSHYSQPRLYRNRI-LWEYC 210
           AH +   +SH+S+PRL  + + + EYC
Sbjct: 19  AHDWDSFESHHSEPRLRTSNLDVGEYC 45


>U58760-1|AAK31461.1|  244|Caenorhabditis elegans Interactor of
           fizzy protein protein1 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 131 NSYPNKGDQVIAAVAARTKPEEFAKLHNIPIVFDSYKALAESNEIDVAYI 280
           NS    G + + ++A+  K     K + IPI F+ Y+   +    DVA I
Sbjct: 46  NSSKTPGGKSLQSLASACKVPPSTKKNTIPIAFECYEDETDDQIADVATI 95


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
           protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 343 SLRKTFVFELQTSREPNQVCEE*ETISNGSCLVEIFSHLHCH*K 474
           S  +  V ++ +++EPN +C       NG C+    +H  C  K
Sbjct: 672 SSEEIVVGDVYSTQEPNNICANSTCGMNGQCVPRNMTHYTCECK 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,495,491
Number of Sequences: 27780
Number of extensions: 310638
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)