Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f11f
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    29   0.49 
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    28   1.1  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   4.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   4.6  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   4.6  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   6.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   6.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.1  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   8.0  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   8.0  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 456 SDVKVIRA-KEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           SD KVI     H+ ++T   +S D+T  +T S   T++ W I
Sbjct: 303 SDCKVIDTIYGHQRSITAATLSPDATHFYTASYDGTVLSWDI 344


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 453 DSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
           D+   +   K H   ++CV  + D++++ TGS  +TI  W
Sbjct: 165 DTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFW 204


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
           H  T + +C++ DSTL+ +GS   T+  W
Sbjct: 350 HGHTDSVLCLTFDSTLLVSGSADCTVKLW 378



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 465 KVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           K I  + H   +  V I  D  LV +GS  STI  WS+
Sbjct: 384 KRITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSL 421


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWS 575
           H  ++TCV +S +   + T S   TI  WS
Sbjct: 53  HEKSVTCVSVSPNKRWIATSSSDGTIKIWS 82


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 115 DLPLRKNEDDISKVFNELLILKNTTL 38
           +LPL  NE DIS +F    I+ N  L
Sbjct: 390 NLPLHWNESDISTLFKPSKIISNRVL 415


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           H   + CVC+   +  +F+G    TI  WS+
Sbjct: 338 HEGPVLCVCVPKATHHIFSGGHDGTIRCWSL 368


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 471 IRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           +R  +H  +++C C   D     TGS    I  WS+
Sbjct: 290 LRDYKHGFSVSCCCWLPDGLSFITGSPDCHITHWSL 325


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 480 KEHRLTLTCV-CISNDSTLVFTGSKCSTIVKWSI 578
           ++ R TL  V C+  D  ++ +GSK  T+  W +
Sbjct: 215 QDFRATLDSVYCVQYDDEIMVSGSKDRTVSVWDV 248


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 480 KEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           + H   LT +  SND  ++FT S    +  W I
Sbjct: 115 RAHYQPLTILKFSNDGMVLFTASNDGDVFAWLI 147


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 EHRLTLTCVCISNDSTLVFTGSKCSTIV 566
           +H   +TC+ ISND   + TG     IV
Sbjct: 206 DHVKEITCLAISNDGRWIVTGGLDHRIV 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,656
Number of Sequences: 5004
Number of extensions: 27929
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)