Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f11f
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 43 2e-04
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 36 0.018
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 34 0.071
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 34 0.094
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 33 0.12
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 31 0.50
01_07_0161 + 41574749-41576044 31 0.50
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.2
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 29 3.5
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 28 4.7
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 28 6.2
11_01_0702 - 5782202-5782277,5782692-5782760,5782878-5783026,578... 28 6.2
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 28 6.2
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 27 8.2
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 27 8.2
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560... 27 8.2
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +3
Query: 381 LQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCST 560
L+R + E+ G+ ++ELADR P D + K HR +T V +S DS F+ SK
Sbjct: 126 LKRQF-EESGRKRMELADRILQPDPEDGFKMLVK-HRQPVTAVVLSKDSDKGFSASKDGV 183
Query: 561 IVKWSI 578
IV W +
Sbjct: 184 IVHWDV 189
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 465 KVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
KV++ K H+ +TC+C + +S + T SK TI W+I
Sbjct: 295 KVMQLKGHKSAVTCLCFALNSEQIITASKDGTIRVWNI 332
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 477 AKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
A H +TC+ +S+DS + TGS+ +T++ W I
Sbjct: 2592 ATGHLAPVTCLALSHDSNYLVTGSRDTTVILWRI 2625
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H +TCV +S DS + TGS+ +T++ W I
Sbjct: 2564 HLAPVTCVALSPDSNYLVTGSRDTTVILWRI 2594
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/46 (26%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 438 YQAPTDSDVKVIRA-KEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
+Q + D +++++ ++H+ ++CV +S+D +++ TGS +T++ W
Sbjct: 2791 FQIISLGDGRIVQSVRQHKDVVSCVAVSSDGSVIATGSYDTTVMIW 2836
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 438 YQAPTDSDVKVIRA-KEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
+Q + SD +++++ ++H+ + CV +S+ +V TGS +T++ W
Sbjct: 3121 FQIISLSDGRIVQSIRQHKDVVACVAVSSRGNVVATGSYDTTVMIW 3166
>01_07_0161 + 41574749-41576044
Length = 431
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 480 KEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
K H + + C+C++ D LVFTGS TI W
Sbjct: 317 KAHDMAVLCLCVAGD--LVFTGSADKTIGLW 345
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 462 VKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
V V +EHRL++ + +S D+T T S S++ W
Sbjct: 1073 VLVAHLQEHRLSVNDIAVSTDNTFFVTASDDSSVKIW 1109
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+L + C+ IS+D L+ TGS + W +
Sbjct: 482 HKLPVLCMDISSDGVLIVTGSADKNLKIWGM 512
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 456 SDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
S+ +++ + H + C+ S DS L+ TG+ + + W++
Sbjct: 366 SESYILKQQGHYFDVNCIAYSPDSQLLATGADDNKVKVWTV 406
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWS 575
H +TCVC D ++ TGS T+ W+
Sbjct: 571 HTDCITCVCSHPDLPILLTGSNDETVRLWN 600
>11_01_0702 -
5782202-5782277,5782692-5782760,5782878-5783026,
5783119-5783250,5783343-5783671,5784166-5784172
Length = 253
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWS 575
H +TCVC D ++ TGS T+ W+
Sbjct: 172 HTDCITCVCSHPDLPILLTGSNDETVRLWN 201
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 560 RATFTACKY*GTIITDTNTCESKSMFFSSYDFDIAVSRCL--ISISKFQFKFPSLFKIIS 387
RAT + G+I NT ES FF + F A + I+K+Q P +F I++
Sbjct: 323 RATVDSKSQVGSIFQVLNTQESPPTFFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVT 382
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 100 KNEDDISKVFNELLILKNTTLSKH 29
K+EDD+SK ++ + K+ L KH
Sbjct: 224 KSEDDVSKWCKDIFVAKDALLDKH 247
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWS 575
H +TCVC D ++ TGS T+ W+
Sbjct: 606 HMDCVTCVCSHPDLPILLTGSNDETVRLWN 635
>04_04_0990 -
29955207-29955551,29955639-29955813,29955887-29956017,
29956317-29956436,29956908-29956984,29957070-29957316,
29957413-29957569,29958191-29958309,29958421-29958555,
29958636-29958921,29959009-29959211,29959732-29959881,
29960084-29960266,29960931-29961278
Length = 891
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 486 HRLTLTCV--CISNDS-TLVFTGSKCSTIVKWSI 578
H + C+ CIS+ TLV TGSK ST+ W +
Sbjct: 408 HTEIVVCIDTCISSSGKTLVVTGSKDSTVRLWDM 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,981
Number of Sequences: 37544
Number of extensions: 156305
Number of successful extensions: 401
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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