Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f11f
(579 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023662-1|AAH23662.2| 475|Homo sapiens RRP9, small subunit (SS... 69 2e-11
BC010048-1|AAH10048.1| 475|Homo sapiens RRP9, small subunit (SS... 69 2e-11
BC009879-1|AAH09879.1| 475|Homo sapiens RRP9, small subunit (SS... 69 2e-11
BC001113-1|AAH01113.1| 475|Homo sapiens RRP9, small subunit (SS... 69 2e-11
AJ001340-1|CAA04687.1| 475|Homo sapiens U3 snoRNP associated 55... 69 2e-11
BC001648-1|AAH01648.1| 432|Homo sapiens WD repeat domain 18 pro... 31 2.9
BC000040-1|AAH00040.2| 432|Homo sapiens WD repeat domain 18 pro... 31 2.9
AC004528-1|AAC12679.1| 431|Homo sapiens R32184_1 protein. 31 2.9
M95627-1|AAA68889.1| 452|Homo sapiens angio-associated migrator... 30 5.1
CR456755-1|CAG33036.1| 452|Homo sapiens AAMP protein. 30 5.1
BC039866-1|AAH39866.2| 434|Homo sapiens angio-associated, migra... 30 5.1
BC020244-1|AAH20244.1| 429|Homo sapiens Similar to angio-associ... 30 5.1
BC008809-1|AAH08809.2| 302|Homo sapiens AAMP protein protein. 30 5.1
AB209790-1|BAD93027.1| 233|Homo sapiens angio-associated, migra... 30 5.1
>BC023662-1|AAH23662.2| 475|Homo sapiens RRP9, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 475
Score = 68.5 bits (160), Expect = 2e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +3
Query: 360 DDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVF 539
+D V RL+ D LEQRG+L+ +A QAP +D++V+R H+L++TC+ ++ D + +F
Sbjct: 105 EDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRG--HQLSITCLVVTPDDSAIF 162
Query: 540 TGSKCSTIVKWSI 578
+ +K +I+KWS+
Sbjct: 163 SAAKDCSIIKWSV 175
>BC010048-1|AAH10048.1| 475|Homo sapiens RRP9, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 475
Score = 68.5 bits (160), Expect = 2e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +3
Query: 360 DDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVF 539
+D V RL+ D LEQRG+L+ +A QAP +D++V+R H+L++TC+ ++ D + +F
Sbjct: 105 EDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRG--HQLSITCLVVTPDDSAIF 162
Query: 540 TGSKCSTIVKWSI 578
+ +K +I+KWS+
Sbjct: 163 SAAKDCSIIKWSV 175
>BC009879-1|AAH09879.1| 475|Homo sapiens RRP9, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 475
Score = 68.5 bits (160), Expect = 2e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +3
Query: 360 DDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVF 539
+D V RL+ D LEQRG+L+ +A QAP +D++V+R H+L++TC+ ++ D + +F
Sbjct: 105 EDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRG--HQLSITCLVVTPDDSAIF 162
Query: 540 TGSKCSTIVKWSI 578
+ +K +I+KWS+
Sbjct: 163 SAAKDCSIIKWSV 175
>BC001113-1|AAH01113.1| 475|Homo sapiens RRP9, small subunit (SSU)
processome component, homolog (yeast) protein.
Length = 475
Score = 68.5 bits (160), Expect = 2e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +3
Query: 360 DDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVF 539
+D V RL+ D LEQRG+L+ +A QAP +D++V+R H+L++TC+ ++ D + +F
Sbjct: 105 EDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRG--HQLSITCLVVTPDDSAIF 162
Query: 540 TGSKCSTIVKWSI 578
+ +K +I+KWS+
Sbjct: 163 SAAKDCSIIKWSV 175
>AJ001340-1|CAA04687.1| 475|Homo sapiens U3 snoRNP associated 55
kDa protein protein.
Length = 475
Score = 68.5 bits (160), Expect = 2e-11
Identities = 29/73 (39%), Positives = 51/73 (69%)
Frame = +3
Query: 360 DDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVF 539
+D V RL+ D LEQRG+L+ +A QAP +D++V+R H+L++TC+ ++ D + +F
Sbjct: 105 EDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRG--HQLSITCLVVTPDDSAIF 162
Query: 540 TGSKCSTIVKWSI 578
+ +K +I+KWS+
Sbjct: 163 SAAKDCSIIKWSV 175
>BC001648-1|AAH01648.1| 432|Homo sapiens WD repeat domain 18
protein.
Length = 432
Score = 31.1 bits (67), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 480 KEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
K HR +TC+ +S D +++ +GS T+ W +
Sbjct: 266 KGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDV 298
>BC000040-1|AAH00040.2| 432|Homo sapiens WD repeat domain 18
protein.
Length = 432
Score = 31.1 bits (67), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 480 KEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
K HR +TC+ +S D +++ +GS T+ W +
Sbjct: 266 KGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDV 298
>AC004528-1|AAC12679.1| 431|Homo sapiens R32184_1 protein.
Length = 431
Score = 31.1 bits (67), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 480 KEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
K HR +TC+ +S D +++ +GS T+ W +
Sbjct: 265 KGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDV 297
>M95627-1|AAA68889.1| 452|Homo sapiens angio-associated migratory
cell protein protein.
Length = 452
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 151 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 181
>CR456755-1|CAG33036.1| 452|Homo sapiens AAMP protein.
Length = 452
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 151 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 181
>BC039866-1|AAH39866.2| 434|Homo sapiens angio-associated,
migratory cell protein protein.
Length = 434
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 133 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 163
>BC020244-1|AAH20244.1| 429|Homo sapiens Similar to
angio-associated, migratory cell protein protein.
Length = 429
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 128 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 158
>BC008809-1|AAH08809.2| 302|Homo sapiens AAMP protein protein.
Length = 302
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 1 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 31
>AB209790-1|BAD93027.1| 233|Homo sapiens angio-associated,
migratory cell protein variant protein.
Length = 233
Score = 30.3 bits (65), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
H+ ++TC S+DSTLV TG + W +
Sbjct: 133 HKDSVTCAGFSHDSTLVATGDMSGLLKVWQV 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,811,506
Number of Sequences: 237096
Number of extensions: 873853
Number of successful extensions: 1792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1787
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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