Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f11f
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-12|AAN60497.1|  528|Caenorhabditis elegans Hypothetical...    35   0.048
AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    35   0.048
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    33   0.19 
AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    31   0.59 
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    30   1.0  

>AC006684-12|AAN60497.1|  528|Caenorhabditis elegans Hypothetical
           protein T02H6.1b protein.
          Length = 528

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +3

Query: 363 DAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFT 542
           + V ++L+ D + + G     +AD  +   D ++     K HRL+  CV  S D+  V +
Sbjct: 101 EEVAEKLRDDAVARTGTQVKRVADVVELEDDLEISY---KPHRLSPLCVAFSPDAKYVIS 157

Query: 543 GSKCSTIVKWSI 578
             K S+IVK+++
Sbjct: 158 CGKESSIVKFNV 169


>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +3

Query: 363 DAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFT 542
           + V ++L+ D + + G     +AD  +   D ++     K HRL+  CV  S D+  V +
Sbjct: 101 EEVAEKLRDDAVARTGTQVKRVADVVELEDDLEISY---KPHRLSPLCVAFSPDAKYVIS 157

Query: 543 GSKCSTIVKWSI 578
             K S+IVK+++
Sbjct: 158 CGKESSIVKFNV 169


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 486  HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
            H   +TC CIS D  LV +G++   I+ W++
Sbjct: 1377 HENVVTCCCISFDERLVVSGARDEKIIVWNV 1407



 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 480  KEHRLTLTCVCISNDSTLVFTGSKCSTIVKW 572
            K H   +TC+C SNDS+L  + S   T+  W
Sbjct: 908  KGHTAAVTCLCSSNDSSLFVSTSFDKTVNVW 938


>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 438 YQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTI 563
           Y+   ++++ V R K+HR ++ C+  + +  L+ TGS   TI
Sbjct: 397 YEQTKNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTI 438


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 438 YQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTI 563
           Y+   ++++ V R K+HR ++ C+  + +  L+ TGS   TI
Sbjct: 663 YEQTKNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTI 704


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 438 YQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTI 563
           Y+   ++++ V R K+HR ++ C+  + +  L+ TGS   TI
Sbjct: 663 YEQTKNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTI 704


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 453 DSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           + D + I    H+  + C+  S+D  L  TG K   IV W I
Sbjct: 91  NEDSEPIMFSGHKKAVNCIEFSSDGLLFATGGKDGVIVLWDI 132



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 486 HRLTLTCVCISNDSTLVFTGSKCSTIVKWSI 578
           H L +TCV I+  S L  TGS   ++  W +
Sbjct: 585 HSLPVTCVDIAPSSKLCVTGSVDKSVKVWGL 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,723
Number of Sequences: 27780
Number of extensions: 151180
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)