Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f10f
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    74   1e-14
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    29   0.67 
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    28   1.2  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   1.5  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    27   2.0  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   3.6  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   3.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.7  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   6.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.3  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +3

Query: 312 KSRVLLVLQLYDKI-NPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 488
           + R+L V+  +DKI +P+++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+ +
Sbjct: 36  EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95

Query: 489 VRPKDIVQYI 518
               D + YI
Sbjct: 96  TSVGDAISYI 105


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 303 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 482
           DL+ + +     LY ++  ++      F     + SLD+   I+ M+   GFEI     E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315

Query: 483 RLVRPKDIVQYI 518
            + +  +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 315 SRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEF 452
           S+VLL LQ    I P  L  + + M +LG +  D+ E ++  + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +3

Query: 6   VLATQAFGFDERELLKENKAFRELEEMAAANIFRSAF------GGLLRRSTTYRTSVTCR 167
           V+A +A       L++ N   REL  + AANI  S F      GG LR      +    +
Sbjct: 348 VIAVKAISLQTNNLIRSN---RELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQ 404

Query: 168 LSTVA 182
           ++T+A
Sbjct: 405 VATIA 409


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 248 WERETWYPQVQRWPSPHLRPYK 313
           WE + + P   RW   H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 83  NGCCEYFPKCFRW 121
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 61  KHFVSLKKWLLRIFSEVLSVVYYGDQQRIERP*HVVFRPL 180
           KH V  + W     SEVL  + Y D        H  F P+
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPI 203


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 518 NVLDNVFWSDQSLCIT--IRYLKSKFIFHCH 432
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 254  RETWYPQVQRWPSPHLRPYKK 316
            +ETWY ++QRW    L  Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 46  C*KKIKHFVSLKKW--LLRIFSEVLSVVYYGDQQRI 147
           C K IKHF  LKKW  +   FSEV     +G   RI
Sbjct: 152 CGKGIKHF--LKKWENMPMAFSEVFLFNIFGGALRI 185


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 458 KSKFIFHCHYDLNMVQ*VKTQIIHEVAIYSQLF 360
           K  FI HCH++L+       +++   A+YS L+
Sbjct: 90  KRNFILHCHHELS-----SGELLRNSALYSILY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,731
Number of Sequences: 5004
Number of extensions: 43650
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)