Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f10f
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   3.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 126 LRRSTTYRTSVTCRLSTVAL 185
           LR S    TS  C+L+ VAL
Sbjct: 262 LRSSENQNTSAECKLAKVAL 281


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 126 LRRSTTYRTSVTCRLSTVAL 185
           LR S    TS  C+L+ VAL
Sbjct: 12  LRSSENQNTSAECKLAKVAL 31


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 491 DQSLCITIRYLKSKFIFHCHYDLNMVQ*VKTQIIHEVAIYSQ 366
           DQ  CI+I  +K  +I      +N      T    EVA+  Q
Sbjct: 174 DQGACISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQ 215


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 482 ETGQTKRHCPIHC 520
           E  + K +CP+HC
Sbjct: 339 EPPRRKNNCPLHC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,254
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)