Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f06f
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0603 - 4350124-4350590,4350995-4353608 33 0.24
03_05_1129 - 30595580-30595771,30596119-30597162 31 0.73
11_06_0610 - 25449085-25453284 31 0.96
05_01_0545 - 4756266-4757510 29 2.2
01_01_0490 + 3620523-3623403,3623524-3623996 29 2.2
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 2.9
04_04_0207 + 23602065-23604315,23604611-23605116 29 2.9
12_01_1033 + 10629897-10632311,10633874-10633879 29 3.9
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 5.1
07_03_1001 - 23224372-23224385,23225451-23227374 28 5.1
12_01_0337 - 2591689-2593839 28 6.8
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 28 6.8
06_03_0615 - 22761375-22761760,22762218-22765026 28 6.8
06_03_0588 + 22567820-22570802,22570917-22571269 28 6.8
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935... 27 8.9
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 117 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQG 218
PE R+R+ E LSN + G P ++G+ P+ G
Sbjct: 349 PEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLG 382
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -2
Query: 460 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 338
A SLR V G G I +EL S PP S E R VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 0.96
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = -2
Query: 403 VSTLVPPLKS-------VTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCP 245
V +++PP+KS ++EP T + P + +++ A +S P+TP + P
Sbjct: 1037 VESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPPAKSSPPHEPISPPETPEKSYP 1096
Query: 244 LTTMVISRPP**GNCPRVAGEPPTILVLLSPASSAL 137
+T S PP + P+ A PPT L PA+ +L
Sbjct: 1097 PSTPEESSPP---SVPK-ASSPPTEKSLPPPATVSL 1128
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 114 VPEA-ERIRKAEEAGLSNTRIVGGSPATLGQFP 209
VP+A R+R+ E LSN R+VG P+ + P
Sbjct: 138 VPDALRRLRRLHELDLSNNRLVGAFPSAVLDLP 170
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 117 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLI-TIVVNG--QPRTGVC 269
PE K GL+ T I G PATLGQ L I T +++G P G C
Sbjct: 220 PEIGNCSKLTMLGLAETSISGPLPATLGQLKNLNTLAIYTALLSGPIPPELGRC 273
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 63 TLPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLIT 233
TL L N ++G + P R+ + + LSN + G P+T+GQ P+ L ++
Sbjct: 84 TLDLSYNLLHGEIP----PTIGRLSRMKYLDLSNNSLQGEMPSTIGQLPWLSTLYMS 136
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 87 VYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGV 266
V G +PE R R+ LS + G PA+LG P +L I V+ TG
Sbjct: 406 VSGNALSGAIPELTRCRRLVSLSLSGNALTGPIPASLGGLP----VLTYIDVSSNGLTGA 461
Query: 267 CGASL 281
A L
Sbjct: 462 IPAEL 466
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 16 HSLRPACYWWLTAVLLHCLCMKIRYTVTLLSMVYQ 120
HSL+P C +LT++ LH ++ +++L +Y+
Sbjct: 524 HSLKPPCRSYLTSLKLHGDLFRLHGLISMLKNLYE 558
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 371 HGTKNDRYARALVGAIEPAVSSCQ*SVSGN--KRSSADARAWLSI 243
H T DR ++ + PA+ + Q VS +R+ AD+R W S+
Sbjct: 647 HDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADSRFWWSL 691
>07_03_1001 - 23224372-23224385,23225451-23227374
Length = 645
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 156 LSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCW 320
LSN +V + GQF YQG + V+G G ++T AH +
Sbjct: 20 LSNDVVVASAAGGDGQFTYQGFAAANLTVDGLATVTASGLLVLTNFTYQAKAHAF 74
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 331 PTKARA*RSFLVP*HSSAVAPELRPVRL*CIRIGLLLPFVMMWPSFTYPVPLLCLIQSIR 510
P A A + LVP + PV + I +GLLLP V + SF V L L+ +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLLLSFPTTVSLHYLLNLLL 158
Query: 511 SL 516
L
Sbjct: 159 RL 160
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 453 DVAVIYLPSPVTLSDTINTIALP 521
+++ + LP P+T S +TIALP
Sbjct: 227 EISTVMLPCPITTSSLCSTIALP 249
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 66 LPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLIT 233
L +H N G + P+ + E+ LS ++ G PA+ G F Y L+++
Sbjct: 509 LDVHNNSFTGAIP----PQFGELMNLEQLDLSMNKLTGEIPASFGNFSYLNKLILS 560
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 60 FTLPLHENPVYGYLTKYGVP-EAERIRKAEEAGLSNTRIVGGSPATLGQ 203
F+L H + + YL+ G+P E + + +SN R+ G P+ LGQ
Sbjct: 585 FSLSEHLDLSHNYLSG-GIPQEVGNLINLNKLSISNNRLSGNIPSALGQ 632
>09_06_0050 +
20493063-20493137,20493253-20493347,20493450-20493547,
20493684-20493842,20493944-20494055,20494185-20494728,
20494818-20494915,20494990-20495229,20495312-20495426,
20495528-20495732,20495805-20496373
Length = 769
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 417 MHPNWSPATIRN 452
MHPNWSPA +++
Sbjct: 564 MHPNWSPAAVKS 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,993,374
Number of Sequences: 37544
Number of extensions: 391783
Number of successful extensions: 1235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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