Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f03f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    67   2e-12
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    67   2e-12
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    63   4e-11
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    29   0.74 
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.0  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   6.9  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   6.9  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   9.1  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
 Frame = +1

Query: 64   LAVLFSKSVSGQFGPFEQDFGYVTVREGAHMFWWLFYTTAPVEKYTERPLIVWLQXXXXX 243
            L V  SK  S      +Q  GY+ V +  H+F+W F +    E     P+++WL      
Sbjct: 571  LRVKDSKPESLGIDTVKQYTGYLDVEDDRHLFFWFFESRNDPEN---DPVVLWLNGGPGC 627

Query: 244  XXXXXXNFEILGPLDLSLQ----ERN-HSWVKNFNVLFVDNPVGTGFSYVDNVMQLTKTN 408
                    E LGP  ++++    E N HSW  N +V+F+D P+ TGFS  D+ +  T T 
Sbjct: 628  SSLTGLFME-LGPSSINIETLKPEYNPHSWNSNASVIFLDQPINTGFSNGDDSVLDTVTA 686

Query: 409  DEIALDFVELMRGFYNRRPEFNDVPLYIYGQSYGG 513
             +    F+ L   F+ + P++  +  +I G+SY G
Sbjct: 687  GKDVYAFLNL---FFAKFPQYAHLDFHIAGESYAG 718


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
 Frame = +1

Query: 154 MFWWLFYTTAPVEKYTERPLIVWLQXXXXXXXXXXXNFEILGPLDL----SLQERNHSWV 321
           +F+W+F +  P  +Y  R  I+WL              E+ GP  L    + Q     W 
Sbjct: 60  LFFWMFESVKP--EYEHRS-ILWLNGGPGCSSEDGSLMEV-GPFRLDDNNTFQLNPGRWD 115

Query: 322 KNFNVLFVDNPVGTGFSYVDNVMQLTKTNDEIALDFVELMRGFYNRRPEFNDVPLYIYGQ 501
           +  N+LFVD P+GTG+SY          N+++A DF      F    PE  +   +I G+
Sbjct: 116 ELGNLLFVDQPLGTGYSY-SLAKDFQSNNEKMANDFSIFFEKFLEEFPERANDEWFIAGE 174

Query: 502 SYGGKMAIDMGLRMHEAEKAGTIRSNLKGIAMGNAWISPV 621
           S+ G+    +  ++ E         NL G+A+GN WI+P+
Sbjct: 175 SFAGQYIPHIAAKLKEKNLV-----NLGGLAIGNGWINPL 209


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
 Frame = +1

Query: 166 LFYTTAPVEKYTERPLIVWLQXXXXXXXXXXXNFEILGPLDLSLQERN-----HSWVKNF 330
           LFYT AP    +E   IVWLQ            F   GP+++S    +      SW    
Sbjct: 87  LFYTYAPAVVDSET-FIVWLQGGPGCAGTLGF-FSENGPIEISQSSPSPSLNPESWTNFA 144

Query: 331 NVLFVDNPVGTGFSYVDNVMQLTKTNDEIALDFVELMRGFYNRRPEFNDVPLYIYGQSYG 510
           N+L++D P GTG+S        T T +E + DFV  ++ FY + P      LY+ G+SYG
Sbjct: 145 NMLWLDQPFGTGYS--QGQAAYTTTIEEASSDFVNALKSFYQKFPHLMKKKLYLVGESYG 202


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 378 NITKASAYRIINEQNIEILHP 316
           +I KA   R+  EQN+E++HP
Sbjct: 218 DIAKAECARLAKEQNLEVIHP 238


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 298 QERNHSWVKNFNVLFVDNPVGTGFSYVDNVMQLTKTNDEIALDFVEL 438
           QE++ +W+ +  +   D  V     ++D  MQ+ +    + L F EL
Sbjct: 362 QEQSETWIGSSTIHLGDTAVPNALLFIDKYMQVPRILTPLVLLFKEL 408


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 85   SVSGQFGPFEQDFGYVTVREGAHMFWWLFYTTAP 186
            S+    GPF + F    V   A   WWL  T  P
Sbjct: 1350 SIVSTTGPFNESFSAKPVEPCASEKWWLNSTAVP 1383


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 443 VDSTIDVLSSTMFLSTFTVSRTVVKWP 523
           VD+   + SST   ST+ + RT++K P
Sbjct: 12  VDAIFAISSSTFLWSTWVLQRTILKRP 38


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 145 GAHMFWWLFYTTAPVEKYTERPLIVWL 225
           G H+F++LF+  A ++++   P + WL
Sbjct: 422 GIHIFYFLFFHVATIQQW---PFLFWL 445


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 352 PVGTGFSYVDNVMQLTKTNDEIALDFVELM 441
           P+ + FSY  ++  LTK   E +++F++ +
Sbjct: 721 PLNSMFSYSSDIRALTKGKGEFSMEFLKYL 750


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 222 PNDEWTFSIFLYWSCCVE*PPKHVSS 145
           PND W   I L   CC   P K   S
Sbjct: 219 PNDVWALGIILINLCCKRNPWKRACS 244


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 448 FYNRRPEFNDVPLYIYGQSYGGKMAIDMGL 537
           FY+ +  + D  +++ G S GG  A  MGL
Sbjct: 265 FYSVKELYPDAQIWLTGHSLGGATAALMGL 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,502
Number of Sequences: 5004
Number of extensions: 54735
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)