Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f02r
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 38 0.004
08_02_1012 + 23550314-23551504 29 1.4
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654... 29 1.8
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 28 3.2
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 28 3.2
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 28 4.3
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 27 5.6
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 27 5.6
02_01_0144 - 1038547-1039650 27 5.6
02_01_0035 - 220036-221419,222050-222801 27 5.6
11_06_0743 + 26847652-26849424 27 7.4
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 7.4
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 27 7.4
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 9.8
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 9.8
03_06_0217 - 32432590-32433495 27 9.8
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 27 9.8
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 167 FLGNINWRSNFASSVSCVIVVVGM-LVRGSVWDFWRRLGPSRNQWLKTKSVCMLPTKEEV 343
F + W+S ++C+ +++G+ L+RG + WR + + W + C +
Sbjct: 392 FQSSTQWQSAIYKEMNCLELLIGLELLRGKIHSCWREMAQLKIPWTPPLNACAVTLLAHA 451
Query: 344 PESLQCR 364
ES C+
Sbjct: 452 RESFSCK 458
>08_02_1012 + 23550314-23551504
Length = 396
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Frame = -2
Query: 295 LVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSD------KGAP 134
L +A P P PS + R R PP+ E+ SA S +G P
Sbjct: 141 LDAAAAAAAPRPPPAPSPQKQQPQPQPRSPRPASPPPVPAAPEVASAVSTPPARPKRGRP 200
Query: 133 KQAANVRPTP 104
+AA +PTP
Sbjct: 201 PRAAKPQPTP 210
>03_02_0223 +
6548810-6549025,6549159-6549211,6549457-6549492,
6549786-6549933,6550078-6550185,6550757-6550824,
6551846-6551969,6552067-6552213,6552545-6552805,
6552885-6553169,6553796-6553939,6554565-6554915,
6555405-6555470,6555598-6555768
Length = 725
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 379 LRDISPALQAFRNFLLGRKHTNALRFEPLVSARTQPPPEIPDGPS 245
LRD + Q F N L R LR+ PLV+ PPP + +G S
Sbjct: 405 LRDATQ--QTFFNILKSRGE-KLLRYPPLVAVDLSPPPAVREGIS 446
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 240 LCEGPSGI-SGGGWVLAETNGSKRRAFV 320
LCEG S + GG+ + ETNG+K+ F+
Sbjct: 293 LCEGLSSVLKPGGFFVFETNGNKQSEFL 320
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 337 LLGRKHTNALRFEPLVSARTQPPPEIPDGPSH 242
+LG T RF + ++RT PPP+ PD PS+
Sbjct: 138 ILGDTCTRGCRFCNVKTSRTPPPPD-PDEPSN 168
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 240 LCEGPSGISGGGWVLAETNGSKRRAFVC 323
LC G S I+G G + ++ NG RR C
Sbjct: 784 LCSGGSAIAGSGMLNSKGNGKHRREGPC 811
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 271 PPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTK 170
PP+I + + H +++R RE P+D+ K
Sbjct: 474 PPQIDEHKQPEENHQLHHSRQILRESGEPVDLAK 507
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 283 RTQPPPEIPDGPSHKHAHNYYYTRDARREVAPP 185
+TQPPP P P+ H Y+Y + E P
Sbjct: 97 QTQPPPPPPPPPTSAAHHAYHYQYQYQYEQPKP 129
>02_01_0144 - 1038547-1039650
Length = 367
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 313 ALRFEPLVSARTQPP-PEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGA 137
A+ +P ++ +QPP P P P H+ A A P V K + +SD A
Sbjct: 16 AVLAKPTHASASQPPAPPRPSNPRHRKTPAKASKTPAPATAAAPPPVEKRPIKTASDLAA 75
Query: 136 PKQAA 122
+AA
Sbjct: 76 AIRAA 80
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 277 QPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAP 134
QPPP P H H H+ ++ E A P SA+S AP
Sbjct: 123 QPPPPARWAPQHHHHHHPHHHLGLDVEAAVPESSGAGAGSAASGAAAP 170
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.1 bits (57), Expect = 7.4
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = -2
Query: 298 PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAAN 119
PL+ + T PPPE P+ + R RR APP T + A + AA
Sbjct: 283 PLLPSTTSPPPEPPE--LRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAA 340
Query: 118 VRPTPGHLYAWDKHYE 71
R P ++W E
Sbjct: 341 GRSLP---HSWSSRLE 353
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 331 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDAR 203
G+K +++ R++ L PP + H HA N DAR
Sbjct: 879 GKKRSSSDRYDDLPLPPPPPPASRHEAAEHAHAKNTAAAADAR 921
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 277 QPPPEIPDGPS-HKHAHNYYYTRDARREVAPPIDVTKELLSAS 152
+PPP +P P + HA Y+YT + P E SAS
Sbjct: 502 RPPPPMPSYPDRYGHADRYHYTAPSATYDPPAYASYSEPYSAS 544
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 274 PPPEIPDG--PSHKHAHNYYYTRDA 206
PPP+ P P H+H H++++ DA
Sbjct: 37 PPPQSPRPRCPDHQHHHHHHHHHDA 61
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 167 FLGNINWRSNFASSVSCVIVVVGMLVRGSV 256
F+ N+ RS F S SCVI ML+ G +
Sbjct: 127 FIPNLVHRSTFHLSFSCVIANSRMLIEGLI 156
>03_06_0217 - 32432590-32433495
Length = 301
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 249 GPSGISGGGWVLAETNGSKRRAFVCFLPRRKFLKA 353
G G GGG A +G R F C +KFLK+
Sbjct: 27 GGGGGGGGGSSSACIDGKDVRLFPCLFCNKKFLKS 61
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 295 LVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPP 185
L+ + PPP P P +H H+ T ++R PP
Sbjct: 49 LLPHQPPPPPPPPPLPQPQHHHDAVSTDESRTPPPPP 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,262
Number of Sequences: 37544
Number of extensions: 269744
Number of successful extensions: 855
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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