Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f02f
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 38 0.005
08_02_1012 + 23550314-23551504 29 1.7
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654... 29 2.2
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 28 3.8
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 28 3.8
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 28 5.1
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 27 6.7
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 27 6.7
02_01_0144 - 1038547-1039650 27 6.7
02_01_0035 - 220036-221419,222050-222801 27 6.7
11_06_0743 + 26847652-26849424 27 8.8
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 8.8
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 27 8.8
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 298 FLGNINWRSNFASSVSCVIVVVGM-LVRGSVWDFWRRLGPSRNQWLKTKSVCMLPTKEEV 122
F + W+S ++C+ +++G+ L+RG + WR + + W + C +
Sbjct: 392 FQSSTQWQSAIYKEMNCLELLIGLELLRGKIHSCWREMAQLKIPWTPPLNACAVTLLAHA 451
Query: 121 PESLQCR 101
ES C+
Sbjct: 452 RESFSCK 458
>08_02_1012 + 23550314-23551504
Length = 396
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Frame = +2
Query: 170 LVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSD------KGAP 331
L +A P P PS + R R PP+ E+ SA S +G P
Sbjct: 141 LDAAAAAAAPRPPPAPSPQKQQPQPQPRSPRPASPPPVPAAPEVASAVSTPPARPKRGRP 200
Query: 332 KQAANVRPTP 361
+AA +PTP
Sbjct: 201 PRAAKPQPTP 210
>03_02_0223 +
6548810-6549025,6549159-6549211,6549457-6549492,
6549786-6549933,6550078-6550185,6550757-6550824,
6551846-6551969,6552067-6552213,6552545-6552805,
6552885-6553169,6553796-6553939,6554565-6554915,
6555405-6555470,6555598-6555768
Length = 725
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 86 LRDISPALQAFRNFLLGRKHTNALRFEPLVSARTQPPPEIPDGPS 220
LRD + Q F N L R LR+ PLV+ PPP + +G S
Sbjct: 405 LRDATQ--QTFFNILKSRGE-KLLRYPPLVAVDLSPPPAVREGIS 446
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 225 LCEGPSGI-SGGGWVLAETNGSKRRAFV 145
LCEG S + GG+ + ETNG+K+ F+
Sbjct: 293 LCEGLSSVLKPGGFFVFETNGNKQSEFL 320
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 128 LLGRKHTNALRFEPLVSARTQPPPEIPDGPSH 223
+LG T RF + ++RT PPP+ PD PS+
Sbjct: 138 ILGDTCTRGCRFCNVKTSRTPPPPD-PDEPSN 168
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 225 LCEGPSGISGGGWVLAETNGSKRRAFVC 142
LC G S I+G G + ++ NG RR C
Sbjct: 784 LCSGGSAIAGSGMLNSKGNGKHRREGPC 811
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 194 PPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTK 295
PP+I + + H +++R RE P+D+ K
Sbjct: 474 PPQIDEHKQPEENHQLHHSRQILRESGEPVDLAK 507
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 182 RTQPPPEIPDGPSHKHAHNYYYTRDARREVAPP 280
+TQPPP P P+ H Y+Y + E P
Sbjct: 97 QTQPPPPPPPPPTSAAHHAYHYQYQYQYEQPKP 129
>02_01_0144 - 1038547-1039650
Length = 367
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 ALRFEPLVSARTQPP-PEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGA 328
A+ +P ++ +QPP P P P H+ A A P V K + +SD A
Sbjct: 16 AVLAKPTHASASQPPAPPRPSNPRHRKTPAKASKTPAPATAAAPPPVEKRPIKTASDLAA 75
Query: 329 PKQAA 343
+AA
Sbjct: 76 AIRAA 80
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 188 QPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAP 331
QPPP P H H H+ ++ E A P SA+S AP
Sbjct: 123 QPPPPARWAPQHHHHHHPHHHLGLDVEAAVPESSGAGAGSAASGAAAP 170
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAAN 346
PL+ + T PPPE P+ + R RR APP T + A + AA
Sbjct: 283 PLLPSTTSPPPEPPE--LRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAA 340
Query: 347 VRPTPGHLYAWDKHYE 394
R P ++W E
Sbjct: 341 GRSLP---HSWSSRLE 353
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 134 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDAR 262
G+K +++ R++ L PP + H HA N DAR
Sbjct: 879 GKKRSSSDRYDDLPLPPPPPPASRHEAAEHAHAKNTAAAADAR 921
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 188 QPPPEIPDGPS-HKHAHNYYYTRDARREVAPPIDVTKELLSAS 313
+PPP +P P + HA Y+YT + P E SAS
Sbjct: 502 RPPPPMPSYPDRYGHADRYHYTAPSATYDPPAYASYSEPYSAS 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,126
Number of Sequences: 37544
Number of extensions: 286558
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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