Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f02f
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein. 64 4e-10
BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase (ubi... 64 4e-10
AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone oxidore... 64 4e-10
BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongatio... 31 1.8
BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein. 31 1.8
AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongatio... 31 1.8
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein. 29 7.2
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein. 29 7.2
AY395768-1|AAR21239.1| 651|Homo sapiens patched protein. 29 7.2
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros... 29 7.2
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros... 29 7.2
AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein. 29 7.2
BC042173-1|AAH42173.1| 722|Homo sapiens ankyrin repeat domain 6... 29 9.5
AL159174-2|CAI39610.1| 640|Homo sapiens ankyrin repeat domain 6... 29 9.5
AL159174-1|CAI39609.1| 692|Homo sapiens ankyrin repeat domain 6... 29 9.5
AL117504-1|CAB55968.1| 641|Homo sapiens hypothetical protein pr... 29 9.5
AL096678-3|CAI42281.1| 640|Homo sapiens ankyrin repeat domain 6... 29 9.5
AL096678-2|CAI42280.1| 692|Homo sapiens ankyrin repeat domain 6... 29 9.5
AB023174-1|BAA76801.2| 693|Homo sapiens KIAA0957 protein protein. 29 9.5
>CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 107 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 283
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 284 DVTKELLSASSDKGAPKQA 340
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 107 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 283
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 284 DVTKELLSASSDKGAPKQA 340
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein.
Length = 121
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 107 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 283
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 16 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 75
Query: 284 DVTKELLSASSDKGAPKQA 340
+ + S K A A
Sbjct: 76 IIMSSQKALVSGKPAESSA 94
>BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 7, 14.5kDa protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 107 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 283
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 284 DVTKELLSASSDKGAPKQA 340
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone
oxidoreductase B14.5A subunit protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 107 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 283
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 284 DVTKELLSASSDKGAPKQA 340
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongation
factor B polypeptide 3C (elongin A3) protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 134 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 307
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 308 ASSDKGAPKQAANVRPTPGHLYA--WD 382
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein.
Length = 544
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 134 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 307
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 192 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 249
Query: 308 ASSDKGAPKQAANVRPTPGHLYA--WD 382
A +D PK P H+++ WD
Sbjct: 250 AGADSAGPK------TVPSHVFSELWD 270
>AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongation
factor Elongin A3 protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 134 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 307
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 308 ASSDKGAPKQAANVRPTPGHLYA--WD 382
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>AY395768-1|AAR21239.1| 651|Homo sapiens patched protein.
Length = 651
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 266 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 296
>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein.
Length = 586
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 227 HAHNYYYTRDARREVA-PPIDVTKELLSASS 316
H H YY T + R E++ P+ VT++ LS S
Sbjct: 107 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 137
>BC042173-1|AAH42173.1| 722|Homo sapiens ankyrin repeat domain 6
protein.
Length = 722
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 343 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 383
>AL159174-2|CAI39610.1| 640|Homo sapiens ankyrin repeat domain 6
protein.
Length = 640
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 256 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 296
>AL159174-1|CAI39609.1| 692|Homo sapiens ankyrin repeat domain 6
protein.
Length = 692
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 308 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 348
>AL117504-1|CAB55968.1| 641|Homo sapiens hypothetical protein
protein.
Length = 641
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 257 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 297
>AL096678-3|CAI42281.1| 640|Homo sapiens ankyrin repeat domain 6
protein.
Length = 640
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 256 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 296
>AL096678-2|CAI42280.1| 692|Homo sapiens ankyrin repeat domain 6
protein.
Length = 692
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 308 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 348
>AB023174-1|BAA76801.2| 693|Homo sapiens KIAA0957 protein protein.
Length = 693
Score = 29.1 bits (62), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 PLVSARTQPPPEIPDGPSH---KHAHNYYYTRDARREVAPP 280
P VSA + P P P H HAHN+ R+ R +PP
Sbjct: 309 PKVSAFSDPTPPADQQPGHQKNLHAHNHPKKRNRHRCSSPP 349
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,519,643
Number of Sequences: 237096
Number of extensions: 1528225
Number of successful extensions: 3523
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3506
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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