Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13f02f
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-3|CAB04385.1|  168|Caenorhabditis elegans Hypothetical pr...    44   5e-05
AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical ...    30   0.85 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z83246-4|CAB05844.1|  414|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73908-6|CAA98132.1|  414|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   3.4  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    28   4.5  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    27   6.0  
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z81538-3|CAB04385.1|  168|Caenorhabditis elegans Hypothetical
           protein F45H10.3 protein.
          Length = 168

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
 Frame = +2

Query: 143 HTNALRFEPLVSAR--TQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASS 316
           + N LRF    SAR  +   P +P G  HK A NYY TRD RR V  P  +         
Sbjct: 50  YQNPLRFPNTQSARPCSAELPALPGGVHHKLADNYYLTRDGRRNVDAPKVLYSSGEFVGG 109

Query: 317 DKGAPKQ-----AAN---VRPTPGHLYAWDK 385
           +K  P Q     A N     PTPG    W +
Sbjct: 110 EKAQPAQVNQGVATNFGLTAPTPGFGAEWSR 140


>AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical
           protein F19B10.11 protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 194 PPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANV 349
           PPE+   PS + A   Y   + R +V   +D+T  L +    +  P++  NV
Sbjct: 384 PPELSQVPSFEEACEIYERWEDRDKVIEGVDLTTFLFNPQGSRKMPQKVRNV 435


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/65 (26%), Positives = 23/65 (35%)
 Frame = +2

Query: 167 PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAAN 346
           P  S  +  P  I      K    Y    +  R   PP+     ++  SS    PKQ   
Sbjct: 420 PSPSPASNVPVTITLSAPAKSPATYGPAPEPSRPAVPPVAPAPSVIPTSSQPSQPKQTQP 479

Query: 347 VRPTP 361
            +PTP
Sbjct: 480 AQPTP 484


>Z83246-4|CAB05844.1|  414|Caenorhabditis elegans Hypothetical
           protein F53B2.6 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 215 PSHKHAHNYYYTRDARREVAPPIDVTKELLSASSD--KGAPKQAANVRPT 358
           P++ H  N    R ARR   P    T++LLS+SS+  K  P      RPT
Sbjct: 273 PTYHHDLNEECQRKARRRNHPRRGETQKLLSSSSECLKYYPVDMPETRPT 322


>Z73908-6|CAA98132.1|  414|Caenorhabditis elegans Hypothetical
           protein F53B2.6 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 215 PSHKHAHNYYYTRDARREVAPPIDVTKELLSASSD--KGAPKQAANVRPT 358
           P++ H  N    R ARR   P    T++LLS+SS+  K  P      RPT
Sbjct: 273 PTYHHDLNEECQRKARRRNHPRRGETQKLLSSSSECLKYYPVDMPETRPT 322


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 167 PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLS-ASSDKGAPKQAA 343
           P ++  + PPP IP      H    Y  +       PP    + +++   S +GAP+   
Sbjct: 285 PALNNYSIPPPPIPGQWQQPHVAAQYVPQSVSSYSQPPPAAAQGVVTQPGSFRGAPRGRG 344

Query: 344 NVRPTPG 364
           N+R   G
Sbjct: 345 NIRGRGG 351


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 138 GSIQTLFVLSHWFR 179
           GSI T+F+L+HW R
Sbjct: 713 GSISTIFILNHWIR 726


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 224 KHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANVRPTP 361
           +  H+Y+Y R   ++V PP   +    S   D   P+Q  N+   P
Sbjct: 279 RRTHSYWYKRP--KKVMPPSSSSSLKTSDDDDDSTPRQIKNLTVNP 322


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 388 MFIPSIKVSRCRSHISSLFRSPFV*ASTK*FLGNINWRSNFASS 257
           +F+  I + +  SH S ++       STK      +WR NF++S
Sbjct: 456 LFVDPIALKQMLSHNSKIYYDLLEKVSTKNSADECDWRKNFSNS 499


>Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical
           protein F58G6.2 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +3

Query: 81  FHYATFHLHCRLSGTSSLVGSIQTLFVLSHWFR------LGPSLLQKSQTDPRTSMPTTT 242
           F   T  L    + T  L+  I TLF+L   F       L  + +QK      ++   T 
Sbjct: 143 FLIVTVRLTIEDTNTFQLLSQICTLFILIVMFISIIIVILCYTFIQKQMKTRFSASSITK 202

Query: 243 ITQETLDAKLLLQLMLP 293
            +QE L+  LLLQ +LP
Sbjct: 203 KSQEQLNMTLLLQFILP 219


>U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical
           protein C28C12.2 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +2

Query: 101 PALQAFRNFLLGRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPP 280
           PA +A  N  +GR  T A     L  +R    P+    P+       +   D  R VAPP
Sbjct: 46  PATRA--NIFMGRTPTPARH---LPESRRMFVPDYTSTPAPTAPRQEFRFEDLSRIVAPP 100

Query: 281 IDVTKELLSASSDKGAPKQAA-NVRPTP 361
           I+ T   L +  +   P +++  V P P
Sbjct: 101 IEQTFIQLDSDGELTLPAESSIAVSPPP 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,357
Number of Sequences: 27780
Number of extensions: 232837
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)