Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f01f
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 27 0.77
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 1.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 2.4
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 26 2.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 4.1
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 4.1
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 4.1
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 25 5.5
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 7.2
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 24 7.2
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 24 7.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 24 7.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 7.2
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 9.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 24 9.5
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.5 bits (58), Expect = 0.77
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 156 IVDNNNPGGVYVVDDNPGGVYVV----DDNPGGVHIVDDNPG 269
IV++NN +Y+V + G VY V DD+PGG+ I+ D G
Sbjct: 11 IVEHNNSKDMYMVIN--GKVYDVSNFADDHPGGLDIMLDYAG 50
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIV 165
+IYD +SSGI + DV + + S+ + ++ S IV
Sbjct: 462 VIYDTSSSGIYIIDVTDQNVSFDSTYSASDVDAWLQSGATIV 503
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 275 NSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNS 96
+SSG+ D +I +D + I NY S I ++H + ++ DST ++ S
Sbjct: 312 HSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHG-HTDSVLCLTFDSTLLVSGS 370
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 2.4
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 123 YVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHI-VDNTER 299
Y + NPG +++ + V ++ + V VVD +P G I + G I V T
Sbjct: 140 YNSPTNPGDIYLASLDTAIPVTLIHCHSSAVQVVDFHPRGHLIATASAKGTVIRVITTSD 199
Query: 300 AINIVE*RKKYI 335
+ E R+ YI
Sbjct: 200 GELVTELRRGYI 211
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 48 KTKMAEERRLGSDGLPGVQDNPGGVYVADDNPGGVHI 158
KTK+ +E D L G P G+ DD +H+
Sbjct: 18 KTKVGDETEFTEDALRGSSLVPTGILNGDDECHALHM 54
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 159 VDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDN 263
VD+ P V+V+D + G +YV D N + + +D+
Sbjct: 511 VDSITPP-VFVIDHSKGVIYVSDRNGNSLTLEEDS 544
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 150 LLRDYRPQHRLHQDYLELPVNHLIPAVFLPPFSFFLKLY 34
L D P HR H D++ HL P S ++Y
Sbjct: 452 LFDDDNPIHRSHHDFIFTTEGHLFPVTNQTRLSTSQRIY 490
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 90 LPGVQDNPGGVYVADDNPGGVHIVD 164
LPG D P G YV+ N IV+
Sbjct: 400 LPGYSDQPSGSYVSSRNLTFARIVE 424
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 177 GGVYVVDDNPGGVYVVD 227
GG Y++ NP +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +3
Query: 207 GGVYVVDDNPG---GVHIVDDNPGGVH 278
GG V DD GVH+V PG VH
Sbjct: 123 GGTLVRDDMAALQAGVHVVVGTPGRVH 149
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +3
Query: 105 DNPGGVYVADDNPGGVHI------VDNNNPGGVYVVDDNPGGVYVVDDNPGG 242
+N VY+ D H+ V+N+ G Y VD G V+D PGG
Sbjct: 84 ENRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKYHVDTLLDGELVLDIYPGG 135
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 177 GGVYVVDDNPGGVYVVD 227
GG Y++ NP +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 177 GGVYVVDDNPGGVYVVD 227
GG Y++ NP +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 234 PGGVHIVDDNPGGVHIVDNTERA 302
P HI+D PGG+ V + RA
Sbjct: 489 PDVTHIIDFGPGGISGVGSLTRA 511
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 347 IYLGYIFFSLFYDINRPFGIIYDVNSSGIV 258
I++ YIFF++ N P I+Y G++
Sbjct: 213 IFICYIFFTVLSFFNVPDAIVYSKLCRGLM 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,298
Number of Sequences: 5004
Number of extensions: 30400
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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