Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f01f
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0502 + 9970516-9971028 31 0.43
07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698 31 0.43
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 29 0.99
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 29 1.3
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 29 1.3
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 29 1.3
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 29 1.7
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 28 2.3
12_02_0987 - 25060266-25060461,25061124-25063351 28 3.0
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 3.0
02_01_0658 + 4906979-4907296 27 4.0
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 27 7.0
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 27 7.0
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 26 9.2
01_05_0021 - 17224430-17224807 26 9.2
>09_02_0502 + 9970516-9971028
Length = 170
Score = 30.7 bits (66), Expect = 0.43
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 105 DNPGGV-YVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHI 281
D GG + DD G +H +N G + DD G + DD +H DD G +
Sbjct: 4 DQRGGWNHCRDDGGGRIHRHENGG-GRIRYCDDGGGRICHPDDGGDRIHRRDDGGGWIRH 62
Query: 282 VDNTE 296
D+ E
Sbjct: 63 RDDVE 67
>07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698
Length = 135
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 42 LKKTKMAEERRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGG 182
++ ++A E RL Q G V VADD GG+ + D +P G
Sbjct: 1 MRVDELASEARLDGSEWCRRQREEGCVEVADDAMGGLRLTDEGHPAG 47
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 29.5 bits (63), Expect = 0.99
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 36 IILKKTKMAEERRLGSDGLP----GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVV-DD 200
++ K K+ EE DG P V+D+PG + V GG I N P VYV +
Sbjct: 506 LVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDIEGNELPRLVYVSREK 565
Query: 201 NPG 209
PG
Sbjct: 566 RPG 568
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 36 IILKKTKMAEERRLGSDGLP----GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVV-DD 200
++ K K+ EE + DG P +D+PG + V + GG+ N P VYV +
Sbjct: 470 LVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREK 529
Query: 201 NPG 209
PG
Sbjct: 530 RPG 532
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 36 IILKKTKMAEERRLGSDGLP----GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVV-DD 200
++ K K+ EE DG P V+D+PG + V GG + N P VYV +
Sbjct: 472 LVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDVEGNELPRLVYVSREK 531
Query: 201 NPG 209
PG
Sbjct: 532 RPG 534
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 36 IILKKTKMAEERRLGSDGLP----GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVV-DD 200
++ K K+ EE + DG P +D+PG + V + GG+ N P VYV +
Sbjct: 463 LVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREK 522
Query: 201 NPG 209
PG
Sbjct: 523 RPG 525
>07_01_1006 +
8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 36 IILKKTKMAEERRLGSDGLP----GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVV-DD 200
++ K K+ EE DG P V+D+PG + V GG + N P VYV +
Sbjct: 533 LVAKAQKVPEEGWTMQDGSPWPGNNVRDHPGMIQVFLGQSGGRDVEGNELPRLVYVSREK 592
Query: 201 NPG 209
PG
Sbjct: 593 RPG 595
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 28.3 bits (60), Expect = 2.3
Identities = 23/98 (23%), Positives = 37/98 (37%)
Frame = +3
Query: 21 VSGQCIILKKTKMAEERRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDD 200
+SG + + AE ++ S+G V+ GG + DNN G +D
Sbjct: 526 ISGDHVEYSRDGEAERAKMNSNG-EAVEAVDGGTEASKGGESADPKDDNNRNGDKSALDI 584
Query: 201 NPGGVYVVDDNPGGVHIVDDNPGGVHIVDNTERAINIV 314
+ G N G ++ G + NTE N+V
Sbjct: 585 DDRGAEDSHCNKNGENVACVENGKTNEAGNTENGENVV 622
>12_02_0987 - 25060266-25060461,25061124-25063351
Length = 807
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 293 GIIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSG 141
G+++D N+ GIVV +V+ +I + DS G V I+ +H+ S G
Sbjct: 515 GVVFDWNTLGIVVQEVNYIELICDR-DSYGCSVQKCYPQSILFMHNGWSFG 564
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 126 VADDNPGGVHIVDNNNPGGVYVVDDNPGG-VYVVDD 230
+ + +PG +VDN+ G Y+ D++ GG +Y V+D
Sbjct: 286 LGESSPGFDVLVDNDADGAAYLHDEDFGGDMYPVED 321
>02_01_0658 + 4906979-4907296
Length = 105
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 144 GGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHIV 284
GGV +V GV VV GGV V+ + G V +V GGV +V
Sbjct: 51 GGVDVVLPGG-SGVDVVLPGGGGVDVILPDGGSVDVVLPGGGGVDVV 96
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 269 SGIVVNDVDSSGIIVNYVDSSGIIVNY 189
S +V+ D +S I ++YVD G+++NY
Sbjct: 581 SNLVICDPESLSIWLSYVDLWGMLLNY 607
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 114 GGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG 209
G VA N G V +++ + GG V+DD G
Sbjct: 92 GPAEVAAKNEGLVSVIEASTEGGTLVLDDGSG 123
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +3
Query: 129 ADDNPGGVHIVDNNNP-GGVYVVDDNPGGVYV-----VDDNPGGVHIVDDNPG 269
+DD+ GG ++ VVDD+ GV V D GGV +VDD+ G
Sbjct: 248 SDDHDGGPDDAEDEAAVQDAGVVDDSGPGVAVELEHEAADQGGGVRVVDDSDG 300
>01_05_0021 - 17224430-17224807
Length = 125
Score = 26.2 bits (55), Expect = 9.2
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G G+ + GV V G V+ + VV GGV VV GGV +V
Sbjct: 58 GGGGVDVILPGGSGVDVVLPRGGSGGDVEAGDGSSELVVPGGGGGVDVVLPGGGGVDVVI 117
Query: 258 DNPGG 272
GG
Sbjct: 118 PGDGG 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,834
Number of Sequences: 37544
Number of extensions: 197916
Number of successful extensions: 619
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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