Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13f01f
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 36 0.008
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 30 0.50
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 0.67
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 0.67
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 0.67
AF077537-3|AAC26271.1| 186|Caenorhabditis elegans Hypothetical ... 29 0.88
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 1.2
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 2.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 2.0
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 2.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 2.0
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 28 2.0
AL110480-2|CAB60326.1| 244|Caenorhabditis elegans Hypothetical ... 28 2.7
AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical ... 28 2.7
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 27 4.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 4.7
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 27 4.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 4.7
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 27 6.2
Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical pr... 27 6.2
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 27 6.2
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 26 8.2
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 8.2
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 26 8.2
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 8.2
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 26 8.2
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/61 (22%), Positives = 39/61 (63%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ ++DS ++++ D G+++ +DS +++ + D+ G+++ +DS ++++ T
Sbjct: 328 GVVLEELDSVELVMSVEDIIGVVLEELDSVELVMSVE-DTIGVVLEELDSVELVMSVEDT 386
Query: 86 I 84
I
Sbjct: 387 I 387
Score = 35.5 bits (78), Expect = 0.013
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ ++DS ++++ D+ G+++ +DS +++ + D+ G+++ ++S ++++ T
Sbjct: 348 GVVLEELDSVELVMSVEDTIGVVLEELDSVELVMSVE-DTIGVVLEELNSVELVMSVEDT 406
Query: 86 I 84
I
Sbjct: 407 I 407
Score = 35.1 bits (77), Expect = 0.018
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ +++S ++++ D+ G+++ +DS +++ D D+ G+++ ++S ++++ T
Sbjct: 28 GVVLEELNSVELVMSVEDTIGVVLEELDSVELVMSVD-DTIGVVLEELNSVELVISVEDT 86
Query: 86 I 84
I
Sbjct: 87 I 87
Score = 34.3 bits (75), Expect = 0.031
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ ++DS ++++ D+ G+++ ++S +++ + D+ G+++ +DS ++++ T
Sbjct: 8 GVVLEELDSVELVMSVDDTIGVVLEELNSVELVMSVE-DTIGVVLEELDSVELVMSVDDT 66
Query: 86 I 84
I
Sbjct: 67 I 67
Score = 34.3 bits (75), Expect = 0.031
Identities = 14/61 (22%), Positives = 38/61 (62%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ ++DS ++ + D+ G+++ +DS +++ + D+ G++ +DS ++++ T
Sbjct: 188 GVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVE-DTIGVVREKLDSVELVMSVEDT 246
Query: 86 I 84
I
Sbjct: 247 I 247
Score = 33.5 bits (73), Expect = 0.054
Identities = 12/61 (19%), Positives = 40/61 (65%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ +++S ++++ D+ G+++ ++S +++ + D+ G+++ +DS ++++ T
Sbjct: 388 GVVLEELNSVELVMSVEDTIGVVLEELNSVELVMSVE-DTIGVVLEELDSVELVMSVEYT 446
Query: 86 I 84
I
Sbjct: 447 I 447
Score = 33.5 bits (73), Expect = 0.054
Identities = 13/61 (21%), Positives = 39/61 (63%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 87
G+V+ ++DS ++++ + G+++ +DS +++ + D+ G+++ +DS ++++ T
Sbjct: 428 GVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVE-DTIGVVLEELDSVELVMSVEYT 486
Query: 86 I 84
I
Sbjct: 487 I 487
Score = 33.1 bits (72), Expect = 0.071
Identities = 16/78 (20%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 138
++ ++NS +V++ D+ G+++ +DS ++++ D+ G++ V+ D+ G+
Sbjct: 30 VLEELNSVELVMSVEDTIGVVLEELDSVELVMSVDDTIGVVLEELNSVELVISVEDTIGV 89
Query: 137 IVRNIDSTRIILNSR*TI 84
++ +DS ++++ TI
Sbjct: 90 LLEELDSVELVMSVEDTI 107
Score = 32.7 bits (71), Expect = 0.094
Identities = 11/56 (19%), Positives = 37/56 (66%)
Frame = -3
Query: 266 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILN 99
G+V+ +++S ++++ D+ G+++ +DS +++ + D+ G++ +DS ++++
Sbjct: 268 GVVLEELNSVELVMSVEDTIGVVLEKLDSVELVMSVE-DTIGVVREKLDSVELVMS 322
Score = 30.7 bits (66), Expect = 0.38
Identities = 14/73 (19%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 138
++ ++NS +V++ D+ G+++ +DS ++++ D+ G++ V+ D G+
Sbjct: 270 VLEELNSVELVMSVEDTIGVVLEKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGV 329
Query: 137 IVRNIDSTRIILN 99
++ +DS ++++
Sbjct: 330 VLEELDSVELVMS 342
Score = 29.9 bits (64), Expect = 0.67
Identities = 13/63 (20%), Positives = 40/63 (63%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 111
++ +++S +V++ D G+++ +DS ++++ D+ G +V+ ++DS +++ D+
Sbjct: 330 VLEELDSVELVMSVEDIIGVVLEELDSVELVMSVEDTIG-VVLEELDSVELVMSVEDTIG 388
Query: 110 IIL 102
++L
Sbjct: 389 VVL 391
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/63 (19%), Positives = 41/63 (65%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 111
++ +++S +V++ D+ G+++ +DS ++++ D+ G +V+ +++S +++ D+
Sbjct: 350 VLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEDTIG-VVLEELNSVELVMSVEDTIG 408
Query: 110 IIL 102
++L
Sbjct: 409 VVL 411
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/79 (20%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDS----------SG 141
++ ++NS +V++ D+ G+++ ++S ++++ D+ G +V+ ++DS G
Sbjct: 390 VLEELNSVELVMSVEDTIGVVLEELNSVELVMSVEDTIG-VVLEELDSVELVMSVEYTIG 448
Query: 140 IIVRNIDSTRIILNSR*TI 84
+++ +DS ++++ TI
Sbjct: 449 VLLEELDSVELVMSVEDTI 467
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/63 (19%), Positives = 41/63 (65%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 111
++ +++S +V++ D+ G+++ ++S ++++ D+ G +V+ ++DS +++ D+
Sbjct: 10 VLEELDSVELVMSVDDTIGVVLEELNSVELVMSVEDTIG-VVLEELDSVELVMSVDDTIG 68
Query: 110 IIL 102
++L
Sbjct: 69 VVL 71
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/89 (19%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Frame = -3
Query: 320 LFYDINRPFGIIYD-VNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII-------- 168
L + G++ + ++S +V++ D+ G++ +DS ++++ D+ G++
Sbjct: 219 LVMSVEDTIGVVREKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGVVLEELNSVE 278
Query: 167 -VVHDVDSSGIIVRNIDSTRIILNSR*TI 84
V+ D+ G+++ +DS ++++ TI
Sbjct: 279 LVMSVEDTIGVVLEKLDSVELVMSVEDTI 307
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/78 (19%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Frame = -3
Query: 290 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 138
++ +++S +V + D+ G+++ +DS ++++ D+ G++ V+ D+ G+
Sbjct: 190 VLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGV 249
Query: 137 IVRNIDSTRIILNSR*TI 84
+ +DS ++++ TI
Sbjct: 250 VREKLDSVELVMSVEDTI 267
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/74 (20%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = -3
Query: 320 LFYDINRPFGIIYD-VNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSS 144
L + G++ + ++S +V++ D G+++ +DS ++++ D G +V+ ++DS
Sbjct: 299 LVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVMSVEDIIG-VVLEELDSV 357
Query: 143 GIIVRNIDSTRIIL 102
+++ D+ ++L
Sbjct: 358 ELVMSVEDTIGVVL 371
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = -3
Query: 281 DVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGIIVR 129
++NS +V++ D+ G++ +DS ++++ D+ G++ V+ D G+++
Sbjct: 133 ELNSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLE 192
Query: 128 NIDSTRIILNSR*TI 84
+DS ++ + TI
Sbjct: 193 ELDSVELVRSVEDTI 207
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.3 bits (65), Expect = 0.50
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 87 GLPGVQDNPGGVYVADDNP---GGVHIVDNNNPGGVYVVDDNPG-GVYVVDDNPGGVHIV 254
G G+ PGG D P GG+ VD GG VD PG G+ +D PGG +
Sbjct: 566 GSRGIDRPPGGDSRGVDRPPGGGGIPGVDRPPGGGRRGVDRPPGSGMPGIDRPPGGDRMG 625
Query: 255 DDNPGG 272
D G
Sbjct: 626 DKQRRG 631
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 66 ERRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGG 182
+R G G+PGV PGG D P G + + P G
Sbjct: 582 DRPPGGGGIPGVDRPPGGGRRGVDRPPGSGMPGIDRPPG 620
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.67
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG + N GG N GG
Sbjct: 102 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAGG 155
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGSGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 125
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + + N GG N GG N GG GG
Sbjct: 122 NAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGG 175
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 96 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 258 DNPGG 272
N GG
Sbjct: 111 GNAGG 115
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.67
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG + N GG N GG
Sbjct: 102 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAGG 155
Score = 29.9 bits (64), Expect = 0.67
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGSGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 125
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + + N GG N GG N GG GG
Sbjct: 122 NAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGG 175
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 96 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 258 DNPGG 272
N GG
Sbjct: 111 GNAGG 115
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.67
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.5 bits (63), Expect = 0.88
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGGGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.5 bits (63), Expect = 0.88
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGGGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 108 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGGGNAGG 125
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G G G N GG N GG + + N GG N GG N GG
Sbjct: 114 GGTGFGG--GNAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 170
Query: 258 DNPGG 272
GG
Sbjct: 171 GKAGG 175
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 96 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 272
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 258 DNPGG 272
N GG
Sbjct: 111 GNAGG 115
>AF077537-3|AAC26271.1| 186|Caenorhabditis elegans Hypothetical
protein F16G10.3 protein.
Length = 186
Score = 29.5 bits (63), Expect = 0.88
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 112 LVESMLRTIIPEESTSWTTIIPEEST*LTIIPEEST*LTIIPEESTSLTTIPEE 273
+V+ +RTI P+E+ +T+ PEES+ T+ P+++ + + + T+ ++
Sbjct: 17 VVDGCMRTIPPDEAYISSTLAPEESS-STMDPDDTVTAEVFLNKHNEVQTVDQD 69
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 147 GVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDD 260
GVH V G Y + D P G++ +D G+ +VDD
Sbjct: 2055 GVH-VPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 180 GVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHIVDN 290
GV+V G Y + D P G+ +D G+ +VD+
Sbjct: 2055 GVHVPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 147 GVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDD 260
GVH V G Y + D P G++ +D G+ +VDD
Sbjct: 2055 GVH-VPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 180 GVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHIVDN 290
GV+V G Y + D P G+ +D G+ +VD+
Sbjct: 2055 GVHVPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 75 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 254
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3191 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3249
Query: 255 DD 260
DD
Sbjct: 3250 DD 3251
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 75 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 254
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3236 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3294
Query: 255 DD 260
DD
Sbjct: 3295 DD 3296
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
protein F44E2.4 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 115 VESMLRTIIPEESTSWTTIIPEEST*LTII----PEEST*LTIIPEESTSLTTIPEE 273
+ S +R + PE+ S TT+I +E+T T ++ T EEST+ T EE
Sbjct: 221 IVSAIRCVTPEQHASSTTLIVDETTESTSASAEDDDDDVLTTNTSEESTATTAHDEE 277
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 75 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 254
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3236 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3294
Query: 255 DD 260
DD
Sbjct: 3295 DD 3296
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 133 TIIPEESTSWTTIIPEEST*LTIIPEEST*LTIIPEESTSLTTIPEEFTS*IIP 294
T +PE ST T+++ +ST T P + T +PE STSL T T+ +IP
Sbjct: 221 TTVPESST--TSVV--QST-TTAEPTSTITSTTVPESSTSLLTSTLASTTTLIP 269
>AL110480-2|CAB60326.1| 244|Caenorhabditis elegans Hypothetical
protein Y24F12A.3 protein.
Length = 244
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 50 NENGGRKTAGIRWFTGSSR*SWWSLCCGR*SRRSPHRGQQ 169
N NG R G+ W R W + GR RR RG++
Sbjct: 121 NHNGSRWNDGLEWNNRDQRTGWIEMADGR-RRRRRRRGRR 159
>AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical
protein W09B6.3 protein.
Length = 578
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 224 NYVDSSGIIVNYVDSSGIIVVHDV-DSSGI 138
NY SSG+I+ Y + +G ++ + D SGI
Sbjct: 35 NYSSSSGVIICYSNGTGEVITQEAFDDSGI 64
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 317 FYDI-NRPFGIIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSS 177
FY++ + ++ +++ ++ VDS+G I+ +V++ IIV ++S
Sbjct: 39 FYNVADNLDSLLQPIDAPANIIAQVDSNGKIIGFVENERIIVGSANTS 86
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 260 VVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIV 165
++ +D+ I+ VDS+G I+ +V++ IIV
Sbjct: 49 LLQPIDAPANIIAQVDSNGKIIGFVENERIIV 80
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.1 bits (57), Expect = 4.7
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 251
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 225 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 280
Query: 252 VDDN---PGGVHIVDNTER 299
GGV D T R
Sbjct: 281 CPKYCAIDGGVFFEDGTRR 299
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.1 bits (57), Expect = 4.7
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 251
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 224 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 279
Query: 252 VDDN---PGGVHIVDNTER 299
GGV D T R
Sbjct: 280 CPKYCAIDGGVFFEDGTRR 298
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 4.7
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 251
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 225 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 280
Query: 252 VDDN---PGGVHIVDNTER 299
GGV D T R
Sbjct: 281 CPKYCAIDGGVFFEDGTRR 299
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/64 (31%), Positives = 22/64 (34%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 257
G DG PG PG PG V P G+ D PG P G D
Sbjct: 240 GQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGPPGDD 299
Query: 258 DNPG 269
+PG
Sbjct: 300 GHPG 303
>Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical
protein F40F12.4 protein.
Length = 541
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 117 GVYVADDNPGGVHIVDNNNPGGVYV-VDDN---PGGVYVVDDNPGGVHIVDDNPGGVHIV 284
G V D HI++ N+PG V++ + + P +Y++ D+ D+ GG I+
Sbjct: 179 GCQVGDGEIRFNHIIEKNDPGPVFINIPEQGPVPFQIYIIADH--FTFNSDNLKGGFAII 236
Query: 285 DNTE 296
D+ E
Sbjct: 237 DSIE 240
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +3
Query: 81 SDGLPGVQDNPG--GVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 254
S G PG PG G +D PG P G VD PG P G
Sbjct: 200 STGTPGAAGAPGPQGPVGSDGQPGSAGAPGAPGPAGAPGVDGQPGA--NGQPGPDGEQGH 257
Query: 255 DDNPG 269
D PG
Sbjct: 258 DGQPG 262
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 87 GLPGVQDNPGGVYVADDNPGGVHIVDNNNP 176
G PG+Q NPGG PGGVH + N P
Sbjct: 1804 GHPGLQ-NPGG------RPGGVHGMGQNQP 1826
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 87 GLPGVQDNPGGVYVADDNPGGVHIVDNNNP 176
G PG+Q NPGG PGGVH + N P
Sbjct: 1793 GHPGLQ-NPGG------RPGGVHGMGQNQP 1815
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGG 242
G+DG PG PG V PG P G NPG + P G
Sbjct: 213 GTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPG---PAGNPGSAGASEPGPAG 264
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 26.2 bits (55), Expect = 8.2
Identities = 31/87 (35%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Frame = +3
Query: 69 RRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDN-NNPGGVYVVDDNPGGVYVVDDNPGGV 245
R G G PG NPGG PGG NPGG+ NPGG PGG
Sbjct: 92 RYSGGLGTPGGPGNPGGP-GGLGTPGGPGTPGGPGNPGGL-GGPGNPGG----PGTPGGP 145
Query: 246 HIVDDNPGG-------VHIVDNTERAI 305
P G V IV N +R I
Sbjct: 146 GTPGGQPHGTAGGTYYVIIVQNGQRVI 172
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGG 242
G+DG PG PG V PG P G NPG + P G
Sbjct: 223 GTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPG---PAGNPGSAGASEPGPAG 274
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 26.2 bits (55), Expect = 8.2
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +3
Query: 78 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPG--GVHI 251
G DGL G +PG +N GG I P G D G D PG G +
Sbjct: 110 GPDGLDGPDGHPGYAAAIKENFGGACISCPAGPAGP-PGPDGCAGEPGTDGAPGEDGQNG 168
Query: 252 VDDNPGG 272
+PGG
Sbjct: 169 APGSPGG 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,474
Number of Sequences: 27780
Number of extensions: 179266
Number of successful extensions: 925
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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