Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e23r
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...   160   1e-41
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.   154   8e-40
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...   154   8e-40
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...   100   1e-23
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score =  160 bits (388), Expect = 1e-41
 Identities = 82/216 (37%), Positives = 122/216 (56%)
 Frame = -1

Query: 657 VVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCN 478
           V GNHDN R+A+R+G    D I ML L LPG+ V Y G+EIG+ED + ++++TVDP+GCN
Sbjct: 349 VSGNHDNHRVASRFGRQRGDEIVMLTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCN 408

Query: 477 TNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLK 298
              P KY   SRDPERTP+ W+   +AGFS  +KTWLP+ E Y++LN+  QK    SH  
Sbjct: 409 AG-PAKYYLKSRDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYV 467

Query: 297 VYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTYFEN 118
            +K+LS L+++     G  E   ++  +   KR L +   +V++N       ++LT    
Sbjct: 468 AFKSLSYLKKQPVIANGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHP 527

Query: 117 VSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLV 10
            +  V  +   V S  + G+     S+ + G    V
Sbjct: 528 PADLVVYACNVVGSGLSHGNWIYPASMTIPGSNSAV 563


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score =  154 bits (373), Expect = 8e-40
 Identities = 77/213 (36%), Positives = 113/213 (53%), Gaps = 1/213 (0%)
 Frame = -1

Query: 657 VVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCN 478
           V GNHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWEDT DP GC 
Sbjct: 343 VPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCG 402

Query: 477 TNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLK 298
                 Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K  + S   
Sbjct: 403 AGKE-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFN 461

Query: 297 VYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEHNIDLTYFE 121
           ++K  + L++   F+     +  LN ++F F R   D   L  ++N  + E  +DL  F 
Sbjct: 462 MFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFN 521

Query: 120 NVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 22
           NV   + +   + NS        +   +  +GF
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score =  154 bits (373), Expect = 8e-40
 Identities = 77/213 (36%), Positives = 113/213 (53%), Gaps = 1/213 (0%)
 Frame = -1

Query: 657 VVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCN 478
           V GNHD  R+ +R+G      I  + LLLPGVAV Y G+EIG+ D Y+SWEDT DP GC 
Sbjct: 343 VPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCG 402

Query: 477 TNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLK 298
                 Y   SRDP RTPF W+   +AGFS++  TWL + E Y+T+N+  +K  + S   
Sbjct: 403 AGKE-NYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFN 461

Query: 297 VYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-VVVNMRDVEHNIDLTYFE 121
           ++K  + L++   F+     +  LN ++F F R   D   L  ++N  + E  +DL  F 
Sbjct: 462 MFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFN 521

Query: 120 NVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 22
           NV   + +   + NS        +   +  +GF
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score =  100 bits (239), Expect = 1e-23
 Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 6/222 (2%)
 Frame = -1

Query: 657 VVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDPSGCN 478
           V+GNHD  R+ TRY     D + ML ++LPGVAVTY GEEIG+ D               
Sbjct: 356 VMGNHDRVRVGTRYPGR-ADHMIMLEMILPGVAVTYYGEEIGMVD--------------- 399

Query: 477 TNDPIKYVESSRDPERTPFHWNPEKNAGFS-----TADKTWLPMAEGYET-LNVEVQKAS 316
            N  I Y    RD  RTPF W+   NAGFS       +K WLP+   Y++ LN+E +K  
Sbjct: 400 -NTTI-YKYDVRDGCRTPFQWDNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKD 457

Query: 315 ERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNID 136
             SH  +Y  L+ LR+ +  + G +    LN+ +    R   +    +++N       +D
Sbjct: 458 SISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSKNNTIVD 517

Query: 135 LTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGFEGLV 10
           ++   N   N  +   SVNS      T +  ++ + G   ++
Sbjct: 518 ISKLVNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSII 559


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 377 LSAVENPAFFSGFQWKGVLSGSLD 448
           +S ++   +F GF W+G+ + +L+
Sbjct: 617 ISEIQKHKWFDGFNWEGLRARTLE 640


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 370 PGLVSGRESSVFLGVPMERSPFG 438
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 370 PGLVSGRESSVFLGVPMERSPFG 438
           P  V  +E  VF G+P  + P G
Sbjct: 51  PRTVLDKEVHVFYGIPFAKPPIG 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,004
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)