Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13e17r
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 45 1e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.17
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.4
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.4
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.5
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 8.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 8.5
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.5
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 44.8 bits (101), Expect = 1e-05
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Frame = -2
Query: 735 KAFAAGADIKEMPNXTYSSNTXQ---GFLREWE---DISNCGKPIIAAVNGFALGGGCEL 574
++F++G DIK + F +E+ ++ KP++A +NG +GGG L
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGL 170
Query: 573 AMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAMEIVLTGNFFDAHE 403
AM A E F PE IG + RLP Y G + LT ++
Sbjct: 171 AMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG----TYLGLTSQIVKGYD 226
Query: 402 AEKMGLVSKVFPVEKLLEETIKLAE 328
+ G+ + P +LAE
Sbjct: 227 CLRTGIATHFVPKHMFPHLEDRLAE 251
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 539 RRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 447
RR+S S RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 545 AKRRNSVSPRSTLAPSPEPEAPSVFP 468
AK + V+P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -3
Query: 575 WQCCAISSMPAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMKPR 396
+Q + S P RN++ P +T +PSV P+T+ S + S +K +
Sbjct: 357 FQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQ 416
Query: 395 KWVLSVK 375
V S K
Sbjct: 417 SHVPSAK 423
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 560 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 649
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 548 PAKRRNSVSPRSTLAPSPEPEAP 480
P K +N++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 2 DFARFFLSIYKSYKQYYTSHLIS 70
D +S+YKSYK Y T+ ++S
Sbjct: 27 DVTMINISLYKSYKSYPTNKVLS 49
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = -2
Query: 606 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 460
NGF ALG GG LA CD G P I TIPG T + + V
Sbjct: 98 NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 551 MPAKRRNSVSPRSTLAPSPEPEAPSVFPD 465
+P+ R+S+SP L+P +P F D
Sbjct: 527 IPSSERSSISPSKPLSPELKPLLNEAFQD 555
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 520 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 431
RD + RSR+ ++ R++ E NGD+V
Sbjct: 56 RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,727
Number of Sequences: 5004
Number of extensions: 76442
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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