Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13e14f
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 29 0.60
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 1.1
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 27 3.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 4.2
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 9.8
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 9.8
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 9.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.8
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 29.1 bits (62), Expect = 0.60
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 587
F+K+ KL +K I+G ++GA A VT KV ++ +D S W ++ R A
Sbjct: 80 FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133
Query: 588 QYVEVIHTDGSGVNKTAGA 644
+ ++I D + + K + A
Sbjct: 134 YFRKMIQIDEANITKYSEA 152
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGN 311
Y Q+N I L ++ PT N P P +N I S T + ++A+ + N
Sbjct: 874 YEEIQKNEIVLKDEQDPTSNFPEIPGTSNLSFAANI---SNALATVGRDLQREAYYMASN 930
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 219 WDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTA 368
+ V++I G G + T PI++D L+ N I WS SLS A
Sbjct: 414 YSYVLLIAGGVGFSYTL--PILRDLILKECNVTSITFIWSCRSLSLLKVA 461
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 586 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
+ F +FS EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 466 PRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYVDRLNDDQ 332
P+ P + LLS L+ K+V L +TA TA V+ N+D+
Sbjct: 173 PKSDPEITQLLSRRLKLEKEVRNLQEQLITAETA-RKVEAKNEDK 216
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.0 bits (52), Expect = 9.8
Identities = 21/99 (21%), Positives = 42/99 (42%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
N +V+ W + + + + + + S++ + P ++ + V GVT
Sbjct: 845 NRVVICWGATLQAPHRAVRLQIEDLPSNVFVTNRGRGSPADQYDLGAAQFITAVNGVTTL 904
Query: 495 NLEGKVARITGLDPSARDWENNVLRLGTNDAQYVEVIHT 611
NLE V I +D +N+ +R+ T+ V V+ T
Sbjct: 905 NLEDFVREIRKID------DNSYVRVSTSTFDKVPVVLT 937
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.0 bits (52), Expect = 9.8
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +3
Query: 126 YYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRS 305
YY++ A I ++ F +GN + + ++ I + + + T I PIV S
Sbjct: 94 YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153
Query: 306 GNYNVIVVDWSSFSLSTYSTAV 371
G Y + ++S L + T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGND------PAAPFNNNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + + +T+T TG P DIV + G++GT T+T+ V
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVT--VTPT 905
Query: 294 FLRSGNYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
+G +V+ + +T + V TG G+ +T
Sbjct: 906 GTSTGT-TTVVIQTPTTVTATETDIVTVTTGYTGTETST 943
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGND------PAAPFNNNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + + +T+T TG P DIV + G++GT T+T+ V
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVT--VTPT 949
Query: 294 FLRSGNYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
+G +V+ + +T + V TG G+ +T
Sbjct: 950 GTSTGT-TTVVIQTPTTVTATETDIVTVTTGYTGTETST 987
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGND------PAAPFNNNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + + +T+T TG P DIV + G++GT T+T+ V
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVT--VTPT 993
Query: 294 FLRSGNYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
+G +V+ + +T + V TG G+ +T
Sbjct: 994 GTSTGT-TTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGND------PAAPFNNNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + + +T+T TG P DIV + G++GT T+T+ V
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVT--VTPT 1037
Query: 294 FLRSGNYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
+G +V+ + +T + V TG G+ +T
Sbjct: 1038 GTSTGT-TTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNPITLTEDHFPTGND------PAAPFNNNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + + +T+T TG P DIV + G++GT T+T+ V
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVT--VTPT 1081
Query: 294 FLRSGNYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
+G +V+ + +T + V TG G+ +T
Sbjct: 1082 GTSTGT-TTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,611
Number of Sequences: 5004
Number of extensions: 61074
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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