Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e10f
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    26   3.5  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   4.7  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   6.2  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   8.2  

>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 232 VEAGRHVPLGHTTVSWDRL 176
           +E G H P+G   + WDRL
Sbjct: 120 LEEGLHAPIGKQQIWWDRL 138


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 184 PNSLSCDPAGHVF 222
           P +LSC P GH+F
Sbjct: 213 PENLSCTPCGHIF 225


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 146 LQRACSGLLTKSIPTHCRV 202
           L+ ACS LL K +PT  R+
Sbjct: 324 LREACSNLLKKRVPTELRL 342


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 578 TCFAAASALWQFSSWLKNLKLL 513
           T +  ++ LW FS WL+++ +L
Sbjct: 111 TSYTISNILWTFSIWLESVAIL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,514
Number of Sequences: 5004
Number of extensions: 44775
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)