Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e10f
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0095 + 11114971-11115939,11115954-11116556                       29   3.6  
10_08_0528 + 18562504-18562568,18563058-18563208,18563296-185633...    28   6.3  
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     28   6.3  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    27   8.4  
03_06_0547 - 34656862-34657217,34657444-34657540                       27   8.4  

>04_03_0095 + 11114971-11115939,11115954-11116556
          Length = 523

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 219 LPASTTLP*LLEVLHVRSRGRSGIQLQRRLDIRFRVADMQLEMGYELYPSC 371
           +P S  LP LLE + +   G SG  +QR +    R+ D+++E    L   C
Sbjct: 219 VPESINLP-LLETMRLTGPGNSGRDIQRLISGCPRLTDLKIEGAPNLRTLC 268


>10_08_0528 +
           18562504-18562568,18563058-18563208,18563296-18563362,
           18563470-18563704,18564655-18564865
          Length = 242

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 193 LSCDPAGHVFLLLPHFRDCS 252
           LS  PA H+FL L  + DCS
Sbjct: 39  LSYSPAAHIFLFLVQWTDCS 58


>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +1

Query: 238 FRDCSKFYMCA-HGEEVEFNCNGGLIFDFELQTCNWKWATNCTLRVVKEDID 390
           F  C K  + A HG  + +N  G        Q C WK      + V KE  D
Sbjct: 645 FASCDKLGIAAEHGYFIRWNKEGEWETSSSAQDCEWKNIAEPIMEVYKETTD 696


>05_01_0431 +
           3412178-3412336,3413012-3413109,3413185-3413312,
           3413770-3413881,3414309-3414489,3414714-3414896,
           3415133-3415315,3416062-3416131,3416413-3416522,
           3416604-3416908,3417079-3417175,3417622-3417765,
           3418217-3418303,3418387-3418473,3418566-3418706,
           3418805-3418930,3419166-3419264,3419690-3419757,
           3420275-3420341,3420713-3420883,3420959-3421048,
           3421831-3421911,3423397-3423470,3423784-3423855,
           3423925-3424017,3424138-3424204
          Length = 1030

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 218 TCPAGSHDSELGSTLLKVLNTLSVAFSAQDTTPVNSKRLRALPNILYK 75
           T P G  D +  + +  V+N L      Q T  ++S+ L+ L N L++
Sbjct: 367 TSPTGRADDDDDTPMDDVINGLDADLEKQITAAIDSRLLQHLVNALFR 414


>03_06_0547 - 34656862-34657217,34657444-34657540
          Length = 150

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 163 RTFNKVDPNSLSCDPAGHVFLLLPHFRDCSKFYMCAH 273
           R    VD  S SC   G ++ LL  F  C   Y C +
Sbjct: 46  RVAEMVDRGSTSCGTGGALYGLLCAFTGCQWIYSCTY 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,411
Number of Sequences: 37544
Number of extensions: 321054
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)