Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e10f
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    35   0.049
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    33   0.15 
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    32   0.35 
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    32   0.35 
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    29   2.4  
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    29   2.4  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical p...    27   9.9  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 244  DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNW 342
            +C  FY C  G +V   C  G +F+  L  C+W
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDW 1289


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
            protein C39D10.7 protein.
          Length = 1185

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 229  LPHFRDCSKFYM-CAHGEEVEFNCNGGLIFDFELQTCNWKWATN 357
            L H + CS  Y+ C +G      C   L+++ + QTCN+K +TN
Sbjct: 1031 LHHLKMCSPHYIVCDNGRAFSGTCIAPLVYNGDTQTCNYK-STN 1073



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 250 SKFYMCAHGEEVEFNCNGGLIFDFELQTCNW 342
           S FY+CA+G+ V   C   LIF+  +  C++
Sbjct: 589 SVFYICANGQVVATTCPANLIFNPYVGECDY 619



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 247 CSK-FYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 360
           C+K F+ C  G     +C G L+F+    TC+  +A NC
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCD--FAENC 482


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 244 DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 360
           DC KF  C +G    F C  GL F  +   C+    + C
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKC 615


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 232 PHFRDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCN 339
           P   +C  FY CA G   + +C  G I+D    TC+
Sbjct: 167 PDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTCD 202


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 244 DCSK-FYMCAHGEEVEFNCNGGLIFDFELQTCNW 342
           +CS  F+ C+ G     NC   L+F+  + +C+W
Sbjct: 189 ECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDW 222



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 RDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKW 348
           R  S F  C +G  +   C  GL+F  + Q C+++W
Sbjct: 250 RCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEW 285


>Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical
           protein F21F12.1 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 575 CFAAAS---ALWQFSSWLKNLKLLGDSGLTVPAESAVRISIGPFSTSSP 438
           CF A +   A WQ   WL +  L GD  + V   S  +  I P S+SSP
Sbjct: 114 CFLATNLSPAQWQ-GYWLAHCALFGDQAVPVHLLSFFQGHISPSSSSSP 161


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247 CSKFYM-CAHGEEVEFNCNGGLIFDFELQTC 336
           CS+ Y  C +G+E  F C  GL F  E   C
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247 CSKFYM-CAHGEEVEFNCNGGLIFDFELQTC 336
           CS+ Y  C +G+E  F C  GL F  E   C
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 417 PGTQARTFSVDVLFHNTKGTIRSPFPVACLQLEIEYQAAVAIE 289
           PGT +   + DV F  +  TI + + +AC  L   ++A +AI+
Sbjct: 35  PGTYSTYSNPDVSFGKSAWTIATVWILACFHLLFYFRAHLAIQ 77


>U40797-13|AAB37545.1|  193|Caenorhabditis elegans Hypothetical
           protein C28C12.2 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 524 LKLLGDSGLTVPAESAVRISIGPFSTSSP 438
           ++L  D  LT+PAES++ +S  P  +S P
Sbjct: 106 IQLDSDGELTLPAESSIAVSPPPRPSSEP 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,202
Number of Sequences: 27780
Number of extensions: 269522
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)