Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e10f
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   6.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 LSCDPAGHVFLLLPHFRDCSKFYMCAH 273
           +S  P  ++FL+   F+D S+ +   H
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 LSCDPAGHVFLLLPHFRDCSKFYMCAH 273
           +S  P  ++FL+   F+D S+ +   H
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 221 KTCPAGSHDSELGSTLLKVLNTLSVAF 141
           +T P  SH +++   LLK  N + V F
Sbjct: 146 RTVPPYSHQTDVWVELLKHFNYMKVIF 172


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 LSCDPAGHVFLLLPHFRDCSKFYMCAH 273
           +S  P  ++FL+   F+D S+ +   H
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 542 SSWLKNLKLLGDSGLTVPA 486
           + W K++ LL +  L VPA
Sbjct: 339 ADWWKDIMLLNEKTLAVPA 357


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 542 SSWLKNLKLLGDSGLTVPA 486
           + W K++ LL +  L VPA
Sbjct: 339 ADWWKDIMLLNEKTLAVPA 357


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 542 SSWLKNLKLLGDSGLTVPA 486
           + W K++ LL +  L VPA
Sbjct: 339 ADWWKDIMLLNEKTLAVPA 357


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 325 LQTCNWKWATNCTLR 369
           L T N+ W + CT R
Sbjct: 60  LDTGNFSWGSECTTR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,261
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)