Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13e08f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   5.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   8.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.7  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 SPWATFGSSSVLVPYSPTSISCL-LPLVSLEPSTGP 246
           SP++T  S+S+   Y+  S+SC   P + L P+  P
Sbjct: 185 SPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSP 220


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
            reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 275  VRTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGD 141
            V +    T +  V+G+ + S +   +EVG  G  T+L+P  A  D
Sbjct: 927  VESSNCITLMDNVDGNLQLSVSMPSIEVGTIGGGTVLEPQGAMLD 971


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 315 QVTHSRSSRLHFVCQNRDEYDEYRAGRRLQRNKWQQTGYGS 193
           QVT       H + Q +++ DE    + + + K+  TG+G+
Sbjct: 80  QVTADDLLEAHSIPQLKNKNDEVSQAKNIPKMKFNTTGFGA 120


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 177 GAVLTNFHILSVATCFSGAFYRPD 248
           G    NFH L VAT   G  Y PD
Sbjct: 239 GKTDNNFHFLLVATLCLGYTYMPD 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,846
Number of Sequences: 5004
Number of extensions: 57059
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)