Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13e07r
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 69 4e-12
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 68 7e-12
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 58 9e-09
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.006
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.011
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 2.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.9
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 5.0
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 5.0
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 5.0
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.8
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.8
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.8
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 68.9 bits (161), Expect = 4e-12
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Frame = -1
Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 538
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC + Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 537 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-- 364
N + + +H YN T ND+A++ + I+ + L +
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151
Query: 363 -----NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCARTFG----NNVIIA 211
N +S N+Q + S+ +I++ C +T+ +V I
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211
Query: 210 STLCVDGSNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-----QRGHPAGFAR 49
G+ T GDSGGPL I S G IGITS+G A G Q P + R
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTR 270
Query: 48 VTSFNSWIRARI 13
++ + WI+ I
Sbjct: 271 ISKYVPWIQGVI 282
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 68.1 bits (159), Expect = 7e-12
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 6/237 (2%)
Frame = -1
Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 538
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ R + +++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112
Query: 537 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN-DVAIIN-HNHVGFTNNIQRINLASGSN 364
+G SG T+ V +H YN+ + D AI+ H V + + I L S
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP- 170
Query: 363 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCAR--TFGNNVIIASTLCVDG 190
++ S + R++ + +++ C+ + + + S LC
Sbjct: 171 -AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY 229
Query: 189 SNGR-STCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQR-GHPAGFARVTSFNSWI 25
S G+ +C GDSGGPL G +L G+ S+G GC R G P + V S ++WI
Sbjct: 230 SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 57.6 bits (133), Expect = 9e-09
Identities = 63/242 (26%), Positives = 95/242 (39%), Gaps = 7/242 (2%)
Frame = -1
Query: 717 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 541
R+VGG GA P A L T CGAS+L T +TAAHC+ R + +
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 540 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 364
+ N G ++ + + Y D +D+AI+ + G N + S
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142
Query: 363 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG 190
+ + + G ++ Q +L I N C + + + S C
Sbjct: 143 DFVYTPGRQCVV--SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGY 200
Query: 189 -SNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRA 19
G +C GDSGGP G+ L G+ S+G GC Q+ P + V + SWI A
Sbjct: 201 LEGGIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISA 258
Query: 18 RI 13
I
Sbjct: 259 II 260
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 228 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 55
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 54 ARVTSF 37
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 276 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 103
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 102 SFGS 91
S+GS
Sbjct: 295 SYGS 298
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -1
Query: 702 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 571
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 720 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 577
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -1
Query: 318 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 148
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 147 LTIGSGGSRQLIGITSFGSA 88
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 493 GDPGASGEDVSCAKSEGELTSLGSPGPP 576
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 447 HNDVAIINHNHVGFTNNIQRINLASGSNN 361
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -3
Query: 412 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 239
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 238 HVWKQCDHC--LHP 203
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 493 GDPGASGEDVSCAKSEGELTSLGSPGPP 576
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 493 GDPGASGEDVSCAKSEGELTSLGSPGPP 576
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 324 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 151
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 324 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 151
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,459
Number of Sequences: 27780
Number of extensions: 317133
Number of successful extensions: 1453
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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