Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d24r
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465...    31   0.87 
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062...    30   1.5  
08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431...    30   1.5  
12_02_0090 + 13493311-13494180                                         29   3.5  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    28   4.6  
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    28   4.6  
02_05_1347 + 35837967-35838060,35838524-35838783                       28   6.1  

>06_01_0641 -
           4652380-4653771,4653850-4654521,4654536-4654707,
           4655515-4655690
          Length = 803

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +2

Query: 212 PNRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTDASFNTRXTQD*VE 391
           P R S   A++Y H    ++  +GG S G +     +H   +  ST +SF +    D VE
Sbjct: 292 PARLSAASAESYDHSFETSRTPWGGDSFGGN-----DHTSFSQSST-SSFCSIGMDD-VE 344

Query: 392 TGAKDAKI-VSDNDDVA*SSAFDVLGESGKCMEVFLWR 502
           T  K  ++ +    D+  ++  + L    K ME+  W+
Sbjct: 345 TEMKRLRLELKQTMDMYSTACKEALNAKQKAMELQRWK 382


>09_04_0440 -
           17605405-17605476,17605558-17605629,17606014-17606277,
           17607106-17607510
          Length = 270

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 35  DYLKQGIFQKPVDCGPVIGNSGWHGL*EEVSDGVGEV 145
           D L+  I +KP +  P     GW G   EV DG GEV
Sbjct: 82  DDLRVLISEKPAEPAPA-KREGWEGFGREVGDGDGEV 117


>08_02_0933 +
           22740123-22740364,22741952-22742390,22743060-22743172,
           22743470-22743575
          Length = 299

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 116 EEVSDGVGEVASKQINI*IRLNSS*GKVYIETPNRNSGDDADAYTHFSTNTKVV--YGGT 289
           EE +DGV E   +Q+N  I +  S   V  + PNR   D  D      T T+ +  +GG+
Sbjct: 218 EEGNDGVAEGILEQVNSTIFILKSGLGVGRKRPNRKDRDRKDRDQEIRTETEAMGRHGGS 277

Query: 290 STG 298
            +G
Sbjct: 278 GSG 280


>12_02_0090 + 13493311-13494180
          Length = 289

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = -1

Query: 351 SVLPVLSLMCSITKATLAPVDVPP*TTFVLVLKCV*ASASSPEFLLGVSI*TLP*EELR- 175
           SV P+LS++   +  T + +     +T VL  +   +SAS+P F    S  T P    + 
Sbjct: 126 SVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSASTPSFTTTSSPVTAPKSSTKY 185

Query: 174 RI*MLICLDATSPTPSLTSSHRPCQPLLPITGPQSTGF 61
            +   I L    P    T+S  PC   +PI+  ++  F
Sbjct: 186 TVATEIVLSPVFPPSCQTTS--PCTGGMPISANRNVAF 221


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 176 LNSS*GKVYIETP-NRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNT 340
           L+SS  K  ++ P +RNSGDD  +  H     KV+   +      +F  +H K  T
Sbjct: 236 LSSSFQKEQVKRPISRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQHDKRPT 291


>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
            20714296-20714556,20715222-20715393,20715501-20715662,
            20716435-20716863,20717729-20717785,20717872-20718842,
            20719098-20719182,20719269-20719637,20719756-20720001,
            20720090-20720362,20720663-20720827,20721328-20721556,
            20721727-20722168,20723152-20724138,20724352-20724517,
            20725070-20725728,20725820-20726186
          Length = 2113

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 206  ETPNRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHI-KLNTGSTDASFNTRXTQD 382
            +T +  S ++ D     ST+      GTS G S + +I HI K +TGS  +S +T     
Sbjct: 1969 KTKHHRSSNEHDVKAS-STSMHDTKSGTSNGVSNSGMIWHIPKAHTGSV-SSVSTIPNTS 2026

Query: 383  *VETGAKDAKI 415
               TG+KD  +
Sbjct: 2027 LFLTGSKDGDV 2037


>02_05_1347 + 35837967-35838060,35838524-35838783
          Length = 117

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 147 ATSPTPSLTSSHRPCQPLLPITGPQST 67
           A SPT  L+SSH+PC+  L  T    T
Sbjct: 2   AASPTRLLSSSHQPCKESLHCTATGRT 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,262
Number of Sequences: 37544
Number of extensions: 258664
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)