Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d24r
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.6  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHDFQHTSSR 230


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 221 SLRNRTHGFQHTSSR 235


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 SLRNRTH*AQHGQHR 351
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 296 QWTCRHKQP 270
           QWTCR  +P
Sbjct: 486 QWTCRQPEP 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,587
Number of Sequences: 438
Number of extensions: 2709
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)