Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d24f
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical p... 30 1.2
Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical ... 29 2.8
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 29 3.8
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 29 3.8
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 29 3.8
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 29 3.8
Z81044-4|CAD42644.1| 96|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF003142-6|AAK73887.1| 653|Caenorhabditis elegans Hypothetical ... 28 6.6
AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical ... 28 6.6
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical
protein R04B5.4b protein.
Length = 456
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 86 DEQTEINARQERLVTNQVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAE 265
DE E+ R + VT ++ + N++K +PL + I P A+ F E
Sbjct: 377 DECNEVGRRVKHRVTREMTFYLRNVKKHE-----EPLYRMASVVSILPSLQ-RAVRRFQE 430
Query: 266 DIKSTGLSNIVIITNNF-SILSARLN 340
DI+ + NI + NF +I++ + N
Sbjct: 431 DIEMANIFNIYALPENFVNIINGKFN 456
>Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical
protein R04B5.4a protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 86 DEQTEINARQERLVTNQVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAE 265
DE E+ R + VT ++ + N++K +PL + I P A+ F E
Sbjct: 374 DECNEVGRRVKHRVTREMTFYLRNVKKHE-----EPLYRMASVVSILPSLQ-RAVRRFQE 427
Query: 266 DIKSTGLSNIVIITNNF-SILSARLN 340
DI+ + NI + NF +I++ + N
Sbjct: 428 DIEMANIFNIYALPENFVNIINGKFN 453
>AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical
protein B0454.6 protein.
Length = 585
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = +2
Query: 227 PEEDFHALAAFAEDIKSTGLSNIVIITNNFSILSARLNLVLSLPRVEASVGAARVELNVF 406
P + H A FAE + G + ++ I + +++ NLV + + +V A + +F
Sbjct: 293 PYDQVHTTAPFAEAFSARGCTTVMYIISIGALIGLTNNLVTGVFALPRAVYAMADDGLIF 352
Query: 407 DYEGYASASGRAAIN 451
+ + ++S + +N
Sbjct: 353 KWLAHVTSSTKVPLN 367
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 539 GGVEADLMLICLDATSPTP-SLTSSHRPCXPLLP 637
G + DL I +DA+SP+P S SSH LLP
Sbjct: 762 GQISRDLSRITVDASSPSPSSRMSSHTAPDSLLP 795
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 539 GGVEADLMLICLDATSPTP-SLTSSHRPCXPLLP 637
G + DL I +DA+SP+P S SSH LLP
Sbjct: 726 GQISRDLSRITVDASSPSPSSRMSSHTAPDSLLP 759
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 539 GGVEADLMLICLDATSPTP-SLTSSHRPCXPLLP 637
G + DL I +DA+SP+P S SSH LLP
Sbjct: 762 GQISRDLSRITVDASSPSPSSRMSSHTAPDSLLP 795
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 539 GGVEADLMLICLDATSPTP-SLTSSHRPCXPLLP 637
G + DL I +DA+SP+P S SSH LLP
Sbjct: 762 GQISRDLSRITVDASSPSPSSRMSSHTAPDSLLP 795
>Z81044-4|CAD42644.1| 96|Caenorhabditis elegans Hypothetical
protein C30H6.10 protein.
Length = 96
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 26 VMKIFVVLTAILACASTQTFDEQTEINARQERLVTNQVASAIENIRKQIREA 181
V+ + L +I+A AS FDE+ +N R R++ NQ+ S I+ R+ ++ A
Sbjct: 6 VVLLLFALCSIVA-ASPMWFDEEEPMNLRAFRVMPNQLDS-IDASRRLLKRA 55
>AF003142-6|AAK73887.1| 653|Caenorhabditis elegans Hypothetical
protein F57C9.4a protein.
Length = 653
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 481 KHQRRLRNFY*-ESQYRPYLRRS*GGSNVNLFGRDLSDTITNFLSQTVPTTIAN 639
KHQR R++ Y P + + ++ NLFG D + +TNF QTV + N
Sbjct: 418 KHQRLTRSYVTLPVDYFPSIDLTEAYNSSNLFGADATMQLTNFY-QTVLKNVLN 470
>AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical
protein F57C9.4b protein.
Length = 856
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 481 KHQRRLRNFY*-ESQYRPYLRRS*GGSNVNLFGRDLSDTITNFLSQTVPTTIAN 639
KHQR R++ Y P + + ++ NLFG D + +TNF QTV + N
Sbjct: 418 KHQRLTRSYVTLPVDYFPSIDLTEAYNSSNLFGADATMQLTNFY-QTVLKNVLN 470
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 134 QVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITNN 313
Q +A+ ++ Q G PL + I+ PP+ +FH + S ++N + N
Sbjct: 412 QTRNAVNSVFVQQHPPGLPPLLGGMQNIMYPPDANFHHSTSCTTPSSSVSVAN-KDVNNV 470
Query: 314 FSILSARLN 340
+LS+ +N
Sbjct: 471 PVVLSSSVN 479
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 134 QVASAIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITNN 313
Q +A+ ++ Q G PL + I+ PP+ +FH + S ++N + N
Sbjct: 412 QTRNAVNSVFVQQHPPGLPPLLGGMQNIMYPPDANFHHSTSCTTPSSSVSVAN-KDVNNV 470
Query: 314 FSILSARLN 340
+LS+ +N
Sbjct: 471 PVVLSSSVN 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,257
Number of Sequences: 27780
Number of extensions: 266352
Number of successful extensions: 801
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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