Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d22r
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.6  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   8.0  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 162 IHSHFTLPTQLISIPQYNIVDHV*SFFSTYLCLLNKSQ 275
           + S F+L + +I  P  NI DH      T +CLL+  Q
Sbjct: 224 VPSEFSLASHII--PCSNIPDHFLVLLETKICLLSVPQ 259


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 17  EYNSYLKIKLY*NKYSSLIT*LCNKIKFNSIIYSKKHSLKHTDSMYRYYP 166
           +YNSY  +  Y N Y  L   L N    N+ +      L H   +Y YYP
Sbjct: 217 KYNSYRLLSTYENSYKELSEMLTNN---NAPL----EVLIHHVMLYHYYP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,689
Number of Sequences: 5004
Number of extensions: 20521
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)