Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d22f
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    30   0.73 
U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    26   9.0  

>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 295 SSLIT*LCNKIKFNSIIYSKKHSLKHTDSMYRYYPFSLYFTYAINLNT 152
           S L+  +CN   F  +I+    S+ ++  ++ YYP  L+F Y + L+T
Sbjct: 126 SDLVLLVCN---FFMLIFPVIASMSNSYLLHDYYPVFLWFAYPVGLST 170


>U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical
           protein F26A10.2 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 274 CNKIKFNSIIYSKKHSLKHTDSMYRYYPFSLYF---TYAINLNTSV*YCRSRLK 122
           C K+ FNS+ Y K+H++KH++      PF   F   TY    N     C  R K
Sbjct: 53  CGKL-FNSVWYLKQHAVKHSNDR----PFKCKFCFKTYKFRSNLYQHKCPERQK 101


>AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical
           protein ZK1225.1 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 235 KHSLKHTDSMYRYYPFSLYFTYAINLNTS 149
           K++L+   S+ RYYP + +  Y +N+N +
Sbjct: 124 KYTLESYASIRRYYPTNKFIIYRLNVNVT 152


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
          receptor, class x protein112 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 70 FFNTFFHLFHYLTLRRDKNHQL 5
          F   FF LFH+LTL +   H L
Sbjct: 23 FLINFFMLFHFLTLEKTSFHLL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,030,344
Number of Sequences: 27780
Number of extensions: 120867
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)