Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d21f
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.75 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.0  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    26   4.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   5.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   5.3  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   7.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.3  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.3  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -2

Query: 259  NDFFGICWRQSFYDRSCFNIHRARFCMACYFNALTAKSTFRLHIACIQKHKNERYKK-IH 83
            N +  I W  + YD    +I   +  M  +   LT    F  ++  ++  +   YK  I 
Sbjct: 916  NCYLSIVWHHALYDGWSIDIIMQQLFMLIHDRRLTIVPQFEDYVQELESLRRLNYKNCIS 975

Query: 82   FIRKYGATFAYLSNNRQSAHGGPI 11
            F +KY   F + S + Q    G +
Sbjct: 976  FWKKYLKDFKFKSLSYQREKMGVV 999


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 266 LTERCPSLVFDENGDKKPFNEILTCCEPVQIRKLSE 373
           L E      FD +   KPFN++++  E + ++KL +
Sbjct: 657 LLENVNVTAFDSDYTLKPFNQLMSFIESLAVQKLPD 692


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 262 VNDFFGICWRQSFYDRSCFNIHRARFC 182
           +N+   IC   SFY  SCF ++   FC
Sbjct: 137 INELTRIC-NASFYATSCFGLYGFAFC 162


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 261 STISSASAGDSPSTTGLASISTGQGFAW 178
           STISSA++  + ++   +S+S  +G AW
Sbjct: 274 STISSATSSSASASPTSSSVSGKRGLAW 301


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 499 YFSVDINETRLIRRTVHLTNLSG 431
           Y +V++N+T LI   +H+ ++SG
Sbjct: 488 YVTVEVNQTSLIDWLMHIVSISG 510


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 524 RSHIGHLLILQCRHQRNEIDQENSSSHKFVWRNFL 420
           R+HIG+LL  QC  + +E     +  +   W NFL
Sbjct: 430 RNHIGYLLTKQCLREISEYHFMQTDPN---WSNFL 461


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = -3

Query: 252 SSASAGDSPSTTGLASISTGQGFAWPAISMHSPRNRHFAFTSLVYKNTRTSVIKKFILYV 73
           S  ++   P    +  +S    F+W + SM        A T+ VY N    +     LY+
Sbjct: 154 SGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIFSS-TLYI 212

Query: 72  N 70
           N
Sbjct: 213 N 213


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 428 NFLSMLDNGPGYHRPTLSSP 369
           NF S L+N PG +RP+   P
Sbjct: 42  NFSSELENSPGGNRPSFGLP 61


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 238 WRQSFYDRSCFNIHRARFCMACYFNALTAKSTFRLHIAC 122
           WR    DR   +  RA+ CM   F ++     + +H AC
Sbjct: 241 WRN--IDRIRLHAIRAQLCMRNQFRSMNTDLCYAIHYAC 277


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 374  SLMLADGIL-GRCPTCLRNFARQICEMNCSPDQSRFVDVYT 493
            S + AD I  G   + ++   +Q+  +N SP ++RF+++YT
Sbjct: 913  SPLAADHIAAGDFESAMKILNKQVGAINFSPLKTRFLEIYT 953


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 205 NIHRARFCMACYFNALTAKSTFRLHIACIQKHKNERYKKIHFIRK 71
           +I+ +  C++C+   L   +  R+H+ C      E  K+I F  K
Sbjct: 187 DINDSTICVSCHQFRLHHSTNLRVHLRCKTSPVIEESKEISFSYK 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,136
Number of Sequences: 5004
Number of extensions: 57561
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)