Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d21f
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0814 - 6163155-6163591,6163729-6164038 33 0.15
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737... 29 2.4
01_03_0100 + 12550646-12550650,12550750-12550846,12551299-125517... 29 2.4
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 29 3.1
03_01_0396 + 3079840-3079946,3080503-3080737,3080826-3080933,308... 28 5.5
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 28 7.2
04_04_1252 + 32093522-32093642,32093912-32094078,32094832-320950... 28 7.2
01_01_0372 - 2900602-2900742,2900817-2901086,2901108-2901197,290... 28 7.2
11_03_0193 - 11437237-11437533,11438834-11439643 27 9.6
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181... 27 9.6
>06_01_0814 - 6163155-6163591,6163729-6164038
Length = 248
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 327 SLNGFLSPFSSKTRLGHLSVKMSTISSASAGDSPSTTGLASISTGQGFAWPA 172
S + L PF + T LG L M + A+A +P T GLA+ + +G W A
Sbjct: 101 SASDVLDPFGAPTSLGRLLALMEDAAVATAA-APGTNGLATAAARRGGWWVA 151
>01_06_1496 +
37772838-37772935,37773039-37773243,37773649-37773742,
37773830-37773933,37774370-37774618,37774706-37774819,
37775010-37775093,37775292-37775462,37775544-37775657,
37775751-37775894
Length = 458
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 366 SFLIWTGSQQVKISLNGFLSPFS-SKTRLGHLSVKMSTISSASAGDSPSTTGLASISTGQ 190
SF G +++NGF F+ + RLG+L+ +++ S T+G +SIS
Sbjct: 269 SFASLPGMWDRTLTVNGFSKAFAMTGWRLGYLAAPKHFVAACGKIQSQFTSGASSISQKA 328
Query: 189 GFA 181
G A
Sbjct: 329 GLA 331
>01_03_0100 +
12550646-12550650,12550750-12550846,12551299-12551712,
12552134-12552556
Length = 312
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 440 ICEMNCSPDQSRFVDVYTEVSGGVRYVNEIDYRLYEPFMLGAHASCAGVIIPQTGLPAIN 619
+ E C P RF + TE+ + +Y P LG H S +I T LP ++
Sbjct: 184 LLEALCPPTTGRFTPITTEIDVSTPATLDNNYYKLLPLNLGLHFSDDQLIRNATLLPFVD 243
Query: 620 MMCGN 634
N
Sbjct: 244 AFAAN 248
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 170 IAGHAKPCPVDIEARPVVEGLSPADAEEIVDILTERCPSLVFDENGDKKPFNEILTCCEP 349
+ GH +P E V SP + R P++VF++ ++ N+ L +
Sbjct: 46 LPGHPRPDAKHDELILAVPRASPGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQS 105
Query: 350 VQIRKLSESL 379
QIRKL + L
Sbjct: 106 KQIRKLVDHL 115
>03_01_0396 +
3079840-3079946,3080503-3080737,3080826-3080933,
3081009-3081178,3081607-3081740,3081856-3082027,
3082160-3082712,3082836-3082948,3083051-3083294,
3083434-3083652
Length = 684
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -2
Query: 238 WRQSFYDRSCFNIHRARFCMACYFNALTAKSTFRLHIACIQKHKNERYKKIHFIRK 71
W S + +C ++ ARF F ALTA + RLH K E K F++K
Sbjct: 164 WFGSVFPLAC-DVINARFT----FEALTATTANRLHYPAYDKFLKEMDKSSEFLQK 214
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +2
Query: 59 SSTVFTYKMNFFITLVLVFLYTSDVKAKCRFR-GECIEIAGHAKPCPVDIEARPVVEGLS 235
S +F+ K + F VL+ S K R GE I + GHA D +V+ L
Sbjct: 428 SEGLFSIKSDVFSFGVLILEIVSGKKTSSFHRYGEFINLLGHAWQMWKDETWLQLVDPLL 487
Query: 236 PADAEEIVDILTERCPSLVFDENGDKKP 319
P D+ I + L EN +P
Sbjct: 488 PTDSHTIEIMRCINIALLCVQENAADRP 515
>04_04_1252 +
32093522-32093642,32093912-32094078,32094832-32095050,
32095143-32095302,32095696-32095825,32095998-32096151
Length = 316
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 200 DIEARPVVEGLSPADAEEIVDILTERCPSLVFDENG 307
D++ G+SPA A I +L+E+ S + +ENG
Sbjct: 155 DLDYLRSTNGISPAQAYAIAKVLSEKEASKLAEENG 190
>01_01_0372 -
2900602-2900742,2900817-2901086,2901108-2901197,
2902557-2902619
Length = 187
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 279 HLSVKMSTISSASAGDSPSTTGLASISTGQGF 184
H+ V +TI+ ++ G+ P+T S G GF
Sbjct: 65 HVMVSSTTIAGSTGGEVPATASAPSAIAGTGF 96
>11_03_0193 - 11437237-11437533,11438834-11439643
Length = 368
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 254 IVDILTERCPSLVFDENGDKKPFNEILTCCEPVQIRKLSESLMLADG 394
+ D + + PSL+F++ PF+E + +P L+E L DG
Sbjct: 143 LADWIKKDSPSLLFEDVHGATPFDESMADLDPETHGLLNEGLAAHDG 189
>09_06_0230 +
21717225-21717301,21717888-21717972,21718045-21718165,
21718244-21718368,21718940-21718984,21719082-21719345,
21720067-21720111,21720182-21720212,21721644-21721693,
21722433-21724310,21724406-21724564,21724821-21724939,
21726917-21727059,21727670-21727735,21728184-21728317,
21728454-21728591,21728927-21729186,21729295-21729406,
21730727-21730909
Length = 1344
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 233 SPADAEEIVDILTERCPS-LVFDENGDKK 316
+P EE+V +L + CP L +NGD K
Sbjct: 108 NPCFIEEVVQLLNQICPGCLTLKQNGDTK 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,444,695
Number of Sequences: 37544
Number of extensions: 359862
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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