Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d21f
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    77   1e-14
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    69   4e-12
Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    29   3.7  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   4.9  
AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 60/178 (33%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
 Frame = +2

Query: 137 AKCRFRGECIEIAGHAK-PCPV-DIEARPVVEGLSPADAEEIVDILTERCPSLVFDENGD 310
           A C  RG C +   +A  PC   D    P     +    E++V+     CP L+    GD
Sbjct: 20  AGCIMRGLCQKHTENAYGPCVTNDTNVEPTAFDKTHPAYEKMVEF----CPHLL---TGD 72

Query: 311 KKPFNEILTCCEPVQIRKLSESLMLADGILGRCPTCLRNFARQICEMNCSPDQSRFVDV- 487
            K       CC P Q   L++ +  A  ILGRCP+C  NFA+  CE  CSP+Q  FV + 
Sbjct: 73  NK------LCCTPSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQDFVSIS 126

Query: 488 ----------YT-EVSGGVRYVNEIDYRLYEPFMLGAHASCAGVIIPQTGLPAINMMC 628
                     +T E      YVN ++YRL   F  G  +SC  V     G PA+ +MC
Sbjct: 127 EMKPIEKKEGFTPEYQPAEAYVNTVEYRLSTDFAEGMFSSCKDVTF--GGQPALRVMC 182


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 29/80 (36%), Positives = 50/80 (62%)
 Frame = +2

Query: 338 CCEPVQIRKLSESLMLADGILGRCPTCLRNFARQICEMNCSPDQSRFVDVYTEVSGGVRY 517
           CC  +Q++ +++ +  A  ILG CP+C  NFA+  C+  CSPDQS+F+ V  E +G    
Sbjct: 86  CCTELQLKGMTDRISNAATILGSCPSCFDNFAKLWCQFTCSPDQSKFMKV-METTGPKNV 144

Query: 518 VNEIDYRLYEPFMLGAHASC 577
           V ++++++   F+ G + SC
Sbjct: 145 VVKMEFKVNRDFVEGLYESC 164


>Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical
           protein F35B12.2 protein.
          Length = 342

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 298 IENKTRTSFS*NVNDFFGICWRQSFYDRSCFNIHRARFCMACYFNALTAK 149
           I+++TRT +     ++F   W +++   S   IH   + +  Y++ALTAK
Sbjct: 244 IDDETRTEYGETFKNYFAKMWNKTYISMSTTKIH---YVVDNYYHALTAK 290


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 338 CCEPVQIRKLSESLMLADGILGRCPTCLRNFARQICEMNCSPDQSRFVD 484
           C + + +    E+L++     GRC  CL   + Q C    S DQSR  D
Sbjct: 464 CFKIINVNNRREALLMG----GRCTRCLGKHSFQTCRRVESHDQSRSCD 508


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 31  IVCYYLNMQK*HRIYV*NEFFYNARSCVFVYK 126
           I C  +N+   H +Y+   F+Y  +SC+F YK
Sbjct: 96  ITCLIVNI---HTLYMTEIFYYRYQSCIFNYK 124


>AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical
           protein Y54E5A.3 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -3

Query: 303 FSSKTRLGHLSVKMSTISSASAGDSPSTT--GLASISTGQGFAWPAISMHSPRNRHFAFT 130
           +S++TR+GHLS++   +   +  + PS +   L  + +   +A   I + S   +     
Sbjct: 121 YSARTRVGHLSIRKWKMEKEAQPNQPSESLNQLHRLLSIPPYAHQGIPLFSSLLKRIVLE 180

Query: 129 SLVYKNTRTSVIKKFIL 79
            ++ ++ R+ ++ KFI+
Sbjct: 181 DIL-RDIRSDLVPKFIV 196


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
           protein F47A4.5 protein.
          Length = 1071

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 443 CEMNCSPDQSRFVDVYTEVSGGVRYVNEIDYRLYE 547
           C  NC  D S   D Y E    +R  NE DY   E
Sbjct: 687 CRSNCRHDCSSAEDEYEETLQKIRIGNESDYEKTE 721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,306
Number of Sequences: 27780
Number of extensions: 328607
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)