Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d21f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 77  YKMNFFITLVLVFLY--TSDVKAKCR 148
           Y   F + + L+FLY   +D+K  CR
Sbjct: 5   YHFFFILVITLIFLYFGEADIKKDCR 30


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 71  IRCYFCIFK**QTIGSRRPYFTS 3
           I CYFCI+K  +  G +  YFTS
Sbjct: 218 IMCYFCIWKGVKWTG-KVVYFTS 239


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 71  IRCYFCIFK**QTIGSRRPYFTS 3
           I CYFCI+K  +  G +  YFTS
Sbjct: 271 IMCYFCIWKGVKWTG-KVVYFTS 292


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 160 LTAKSTFRLHIACIQKHKNERYKKIHFIRKYGATFAYLSNNR 35
           L  + T R   +C ++ + + YK  +  RKY  T    S +R
Sbjct: 262 LLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDR 303


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 458 SPDQSRFVDVYTEVSGGVRYVNEIDYRLYEPF 553
           SP+Q+ + D++      + Y+++ D+R  E F
Sbjct: 355 SPNQNVYGDLHNFGHVAISYIHDPDHRYLESF 386


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 71  IRCYFCIFK**QTIG 27
           I CYFCI+K  +T G
Sbjct: 185 ILCYFCIWKGVKTTG 199


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 170 FQCTHREIDISPSHRLYTK---TQERAL*KNSFY 78
           FQC +    ++P ++ YTK   T++R   +N+ +
Sbjct: 434 FQCRYPNASVTPYNKNYTKFCSTEKRLTKQNTAF 467


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 164 IEIAGHAKPCPVDIEARPVV 223
           I+ +G+ KP PV   A P++
Sbjct: 211 IKKSGYKKPTPVQKHALPII 230


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 279 HLSVKMSTISSASAGDSPSTTGLASISTGQGFAWPAISMH 160
           H + +   +  AS    P +TG  + STG       +S H
Sbjct: 159 HDASEKEQLGLASVKAEPGSTGTTTTSTGTRLLHGILSQH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,768
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)