Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d20f
(567 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 33 0.93
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 33 0.93
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 33 0.93
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 33 0.93
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 33 0.93
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 33 0.93
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 33 0.93
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 33 0.93
Y08614-1|CAA69905.2| 1071|Homo sapiens CRM1 protein. 32 1.2
D89729-1|BAA23415.1| 1071|Homo sapiens CRM1 protein protein. 32 1.2
BC032847-1|AAH32847.1| 1071|Homo sapiens XPO1 protein protein. 32 1.2
AC016727-1|AAY14949.1| 1071|Homo sapiens unknown protein. 32 1.2
S76067-1|AAD14207.1| 261|Homo sapiens CNG2 protein. 30 6.5
BC126304-1|AAI26305.1| 664|Homo sapiens cyclic nucleotide gated... 30 6.5
BC126302-1|AAI26303.1| 664|Homo sapiens cyclic nucleotide gated... 30 6.5
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2405 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2464
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2465 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2515
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 1127 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 1186
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 1187 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 1237
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Frame = -1
Query: 348 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 181
SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK
Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467
Query: 180 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 55
V LE + D +L++N+++E A ++ + RE D
Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518
>Y08614-1|CAA69905.2| 1071|Homo sapiens CRM1 protein.
Length = 1071
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 67 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 165
FSL Q +F E+ RDFL IK+ AG D LF
Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034
>D89729-1|BAA23415.1| 1071|Homo sapiens CRM1 protein protein.
Length = 1071
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 67 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 165
FSL Q +F E+ RDFL IK+ AG D LF
Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034
>BC032847-1|AAH32847.1| 1071|Homo sapiens XPO1 protein protein.
Length = 1071
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 67 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 165
FSL Q +F E+ RDFL IK+ AG D LF
Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034
>AC016727-1|AAY14949.1| 1071|Homo sapiens unknown protein.
Length = 1071
Score = 32.3 bits (70), Expect = 1.2
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 67 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 165
FSL Q +F E+ RDFL IK+ AG D LF
Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034
>S76067-1|AAD14207.1| 261|Homo sapiens CNG2 protein.
Length = 261
Score = 29.9 bits (64), Expect = 6.5
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 471 EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEMDV 304
E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M+
Sbjct: 58 EYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEA 116
Query: 303 NVV 295
V+
Sbjct: 117 KVI 119
>BC126304-1|AAI26305.1| 664|Homo sapiens cyclic nucleotide gated
channel alpha 2 protein.
Length = 664
Score = 29.9 bits (64), Expect = 6.5
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 471 EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEMDV 304
E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M+
Sbjct: 349 EYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEA 407
Query: 303 NVV 295
V+
Sbjct: 408 KVI 410
>BC126302-1|AAI26303.1| 664|Homo sapiens cyclic nucleotide gated
channel alpha 2 protein.
Length = 664
Score = 29.9 bits (64), Expect = 6.5
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 471 EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEMDV 304
E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M+
Sbjct: 349 EYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEA 407
Query: 303 NVV 295
V+
Sbjct: 408 KVI 410
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,691,572
Number of Sequences: 237096
Number of extensions: 1234572
Number of successful extensions: 3902
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3894
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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