Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d20f
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    33   0.19 
AC087081-7|AAG37975.1|  303|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93377-7|CAB07571.2|  197|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    27   7.1  
AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical...    27   7.1  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    27   7.1  
Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    27   9.4  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    27   9.4  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    27   9.4  

>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = -1

Query: 441 ILGEFTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVENINKEMDVNVVIFQEIDHSFEF 262
           I+G   DN + +     S  +    FN +  +   +V   N+E D  +VIF  ++H +  
Sbjct: 17  IIGVKCDNCILINYIFISVFATLVAFNLVLFTLYVYVFKTNRERDKEIVIFPFVNHFYNV 76

Query: 261 RQVFHLIDQVSEVLRGEV 208
            +++ L+  +S ++ G V
Sbjct: 77  IKIYQLL--ISSIIAGFV 92


>AC087081-7|AAG37975.1|  303|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.10 protein.
          Length = 303

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 EHYIEFEEFQRSFDYLTTKDFRDLIYEMEDLPEFK 270
           EH   FEEF  S  YL T    D+I ++   P F+
Sbjct: 207 EHLFRFEEFSISLPYLLTDTVVDIIDDLLTRPTFR 241


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -1

Query: 207 VKRTLELLKFDVMLEQMLDIMTSL--VLNYVKEITEVFYEALLRLRQREAKS 58
           VK TLELLK + + E   +I++SL  V  + +++ + F+ AL  +RQ E  S
Sbjct: 344 VKDTLELLKDNPIHETAANIISSLDKVEKFAQDMAD-FFTALNSIRQIEESS 394


>AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.11 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 160 LFEHYIEFEEFQRSFDYLTTK 222
           LFEH+  FE+F  + DY +T+
Sbjct: 215 LFEHFFHFEKFLVTLDYFSTQ 235


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 366 FNSLTDSFNHFVENINKEMDVNVVIFQEIDHSFE 265
           F  L   F  +V  +NKE D N  +F   +H FE
Sbjct: 37  FYILVFPFYVYVNKVNKERDKNAFVFPITNHFFE 70


>Z93377-7|CAB07571.2|  197|Caenorhabditis elegans Hypothetical
           protein F13A7.11 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 391 RDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 519
           RD +    D IG  P+D     YE K  E  +   A EN+  E
Sbjct: 123 RDLSYRYRDSIGNVPRDLTVLQYEMKEVEHGKEDFAKENISPE 165


>U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical
           protein ZK1193.5a protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/79 (22%), Positives = 42/79 (53%)
 Frame = -1

Query: 369 PFNSLTDSFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTLE 190
           PF+ +T++ +  VEN+ K++  +VV+      S +   V  + +  +++L+  V K    
Sbjct: 72  PFDQITENLDDTVENLFKDISSHVVLKILSKPSTDSNSVQCISEVKNKLLKAAVNKNPNV 131

Query: 189 LLKFDVMLEQMLDIMTSLV 133
           L   D   +Q+ D++ +++
Sbjct: 132 LTNVD--NQQVKDVINTII 148


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 LADATSLPTLTILSVNSPRINSQPCTNRNSLRTKNL 490
           LA    +   ++   + P+  +  CT++N+L TKNL
Sbjct: 225 LARGLKVDNSSLTGESEPQTRNMNCTSKNALETKNL 260


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 LADATSLPTLTILSVNSPRINSQPCTNRNSLRTKNL 490
           LA    +   ++   + P+  +  CT++N+L TKNL
Sbjct: 225 LARGLKVDNSSLTGESEPQTRNMNCTSKNALETKNL 260


>AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical
           protein C35E7.2b protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 127 IKDEAGHDIEHLFEHYIEFEEFQRSFDYLTTKDFRDLIYEMEDLPEFKAVVDF 285
           ++++   D    ++   E+E+ Q  FD +  K F+ L   MED   FK ++DF
Sbjct: 106 LRNQMHPDYHPTYKKNSEYEDAQEDFDDIELKVFQKLC-NMED-NLFKQIIDF 156


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 127 IKDEAGHDIEHLFEHYIEFEEFQRSFDYLTTKDFRDLIYEMEDLPEFKAVVDF 285
           ++++   D    ++   E+E+ Q  FD +  K F+ L   MED   FK ++DF
Sbjct: 410 LRNQMHPDYHPTYKKNSEYEDAQEDFDDIELKVFQKLC-NMED-NLFKQIIDF 460


>Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical
           protein C18D4.9 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -1

Query: 258 QVFHLIDQVSEVLRGEVVKRTLELLKFDVMLEQMLDIMTSLVLNYVKEITEVFYEALLRL 79
           +VF+L+  V  V R  + K+T  LL   + +E ++    +++++ +  I  ++   +++ 
Sbjct: 187 RVFYLVSTVERVFRLRISKKT-ALLNSTLQVEFLI---MNVLISLLSPI--IYIPIMMKT 240

Query: 78  RQREAKSDQ-AHKHNSDF 28
           R+    S Q AH HN  F
Sbjct: 241 RENRMYSQQHAHLHNYVF 258


>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 133 DEAGHDIEHLFEHYIEFEEFQRSFDYLTTKD 225
           D + H   H F H  E E+  RS +Y  T+D
Sbjct: 742 DYSAHVCYHYFAHVHEDEQLWRSHNYAETRD 772


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 122 SRKSRKFSTKLFFGCG 75
           S+K+R F  K FFGCG
Sbjct: 12  SKKNRNFKKKPFFGCG 27


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 122 SRKSRKFSTKLFFGCG 75
           S+K+R F  K FFGCG
Sbjct: 12  SKKNRNFKKKPFFGCG 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,212
Number of Sequences: 27780
Number of extensions: 209413
Number of successful extensions: 860
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)