Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d17r
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 691 LELSRQLDVDPRACVGSFFSKIQTAEQAY 605
           ++LSR LD  PR  V + F+ +  A+ +Y
Sbjct: 457 VDLSRGLDFTPRGAVLARFTHLNHADFSY 485


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 259  PLNAFQFWNPSWWVPHHF 312
            P   F FWNP  ++P  F
Sbjct: 1157 PFTPFNFWNPPPFMPSPF 1174


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 90  DICYKNNTNRVFYLKLTKYIVFCIKM 167
           D C   NT+ + Y  L+ + + CI M
Sbjct: 334 DQCLFYNTDFIIYSSLSSFYIPCIIM 359


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 81  YFSDICYKNNTNRVFYLKLTKYI-VFCIKMKNSN 179
           YF +IC   N  RV  ++   Y  +F + + + N
Sbjct: 519 YFGEICLLTNARRVASVRAETYCNLFSLSVDHFN 552


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 81  YFSDICYKNNTNRVFYLKLTKYI-VFCIKMKNSN 179
           YF +IC   N  RV  ++   Y  +F + + + N
Sbjct: 487 YFGEICLLTNARRVASVRAETYCNLFSLSVDHFN 520


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 684 CPDNWMWI 661
           CP +W+WI
Sbjct: 383 CPADWLWI 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,547
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)