Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d17f
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    49   4e-07
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    29   0.37 
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    27   2.6  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 156 VDYSKWKDIEISDDED-ETHPNIDTPSLFRWR 248
           +DYSKW  +E+SDD D E HPN+D  S  RWR
Sbjct: 3   IDYSKWDKLELSDDSDIEVHPNVDKKSFIRWR 34


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 190 PTMKTRPIQTLIPHHCFDGGTR--PVWNAWKSDAARKRNWSKE 312
           P  K  PIQ L+P +C +G  +  P   AW  D      + KE
Sbjct: 278 PPTKPYPIQKLLPQNCPEGHAKMIPCLLAWNPDVRPTAKYCKE 320


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 177 DIEISDDEDETHPNIDTPS 233
           D  I D+EDE  P +DTPS
Sbjct: 279 DGTIEDNEDEKKPPVDTPS 297


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 495 TISEPGFNKTVINTKALRPSNENLTE 572
           T+  P  NKT+++     PSN+ LTE
Sbjct: 101 TVETPLANKTIVSPLPESPSNDALTE 126


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 22/103 (21%), Positives = 41/103 (39%)
 Frame = -3

Query: 327 VGFLSFFAPVPLSRGVALPCVPHGPGAAIETMMGYQCLDGSRLHRRKFRYLSICCSRPLF 148
           +GF+  F PVP   G       +     + ++MGY+    SR+H     Y  I  +    
Sbjct: 237 LGFIIEFIPVPAVAGFTTGSALNIMAGQVSSLMGYK----SRVHTNAATYRVIIQTLQNL 292

Query: 147 EKLDLVIHFDNIQIF*TLLVNSKKN*LVPETRRNRKFFHLSDL 19
               +   F  + +F   LV      L+    + ++ F L+++
Sbjct: 293 PHTKVDAAFGLVSLFILYLVRYTCQHLIKRYTKFQRVFFLTNV 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,668
Number of Sequences: 5004
Number of extensions: 39317
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)