Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d17f
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    29   3.5  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    29   3.5  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    29   3.5  
12_02_0888 + 24027358-24027565,24027858-24027868                       28   4.6  
07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518           28   6.1  
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    27   8.0  
03_02_0849 - 11768191-11771412                                         27   8.0  

>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 263 GTHGRATPRERGTGAKKERKPTTSNRDQEKNIGS*CRQP*SKFIKKDAS 409
           G  G    R+R  G +KER   +  +D EK+ G    +  SK  +KD S
Sbjct: 65  GGGGGREHRDRDDGKEKERSSRSRGKDAEKDRGKDGEKDRSKEAEKDRS 113


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 15   QTSLKGERIFDFCEFLEPINFFLNLL 92
            ++S +GER+  FC  + PI F + L+
Sbjct: 1695 KSSFRGERVLIFCHNVSPITFLVKLI 1720


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 224  YPIIVSMAAPGPCGTHGRATPRERGTGAKKERKPTTSNRDQEKN 355
            YP+  +M     CG   R  P + GT + ++  PT++  D+E N
Sbjct: 1190 YPL--NMDKHPSCGVSSREHPTQLGTCSAQQEPPTSNVEDKEDN 1231


>12_02_0888 + 24027358-24027565,24027858-24027868
          Length = 72

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 MAAPGPCGTHGRATPRERGTG 304
           + APG CG  GRA  R R  G
Sbjct: 16  LGAPGACGAAGRAVGRRRAAG 36


>07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518
          Length = 320

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 345 WSRLDVVGFLSFFAPVPLSRGVALPCVPHGPGAAIETMM-GYQCLDGSRL 199
           WS L   G +S   P+   R V  P  P   GAAI+ M   Y   DG RL
Sbjct: 50  WSELARTGRISDGLPINHDRSVFRPRSPPSYGAAIDAMFTAYD--DGGRL 97


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 263 GTHGRATPRERGTGAKKER 319
           GTH RA P ERG GA + R
Sbjct: 42  GTHRRAHPDERGGGAGRRR 60


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 201 LHRRKFRYLSICCSRPLFEKLDLVIHFDNIQI 106
           ++R   RY+SI C +    +L ++ +++NI+I
Sbjct: 524 INRDLVRYVSILCQKDELPELTMICNYENIRI 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,764
Number of Sequences: 37544
Number of extensions: 241862
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)