Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13d17f
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000266-4|ABB51177.1| 403|Caenorhabditis elegans Hypothetical ... 86 2e-17
AF000266-5|AAC71172.1| 370|Caenorhabditis elegans Hypothetical ... 85 3e-17
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.58
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 31 0.58
Z30662-8|CAA83136.2| 278|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 30 1.3
AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine re... 28 4.1
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 27 7.2
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z70310-2|CAA94367.1| 462|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 9.5
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 27 9.5
>AF000266-4|ABB51177.1| 403|Caenorhabditis elegans Hypothetical
protein W08F4.8b protein.
Length = 403
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/130 (36%), Positives = 59/130 (45%)
Frame = +3
Query: 144 SQTMVDYSKWKDIEISDDEDETHPNIDTPSLFRWRHXXXXXXXXXXXXXXXXXXXXXXXX 323
S+ +DYSKWKDIE+SDDED+THPNIDTPSLFRWRH
Sbjct: 32 SKMPIDYSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTT 91
Query: 324 XXXLTETRKKISEADADSPNLNSLKKTXXXXXXXXXXXXXXXXXXXXXXXHTPWNVDTIS 503
+ E KK+ A AD + + ++K PWNVDTI
Sbjct: 92 SKKMEELEKKL--AAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEKERLEPWNVDTIG 149
Query: 504 EPGFNKTVIN 533
F+ + IN
Sbjct: 150 HEAFSTSRIN 159
>AF000266-5|AAC71172.1| 370|Caenorhabditis elegans Hypothetical
protein W08F4.8a protein.
Length = 370
Score = 85.0 bits (201), Expect = 3e-17
Identities = 46/126 (36%), Positives = 57/126 (45%)
Frame = +3
Query: 156 VDYSKWKDIEISDDEDETHPNIDTPSLFRWRHXXXXXXXXXXXXXXXXXXXXXXXXXXXL 335
+DYSKWKDIE+SDDED+THPNIDTPSLFRWRH +
Sbjct: 3 IDYSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTTSKKM 62
Query: 336 TETRKKISEADADSPNLNSLKKTXXXXXXXXXXXXXXXXXXXXXXXHTPWNVDTISEPGF 515
E KK+ A AD + + ++K PWNVDTI F
Sbjct: 63 EELEKKL--AAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEKERLEPWNVDTIGHEAF 120
Query: 516 NKTVIN 533
+ + IN
Sbjct: 121 STSRIN 126
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 60 LEPINFFLNLLVKFKIFEYYQSE*LNQVSQTMVDYS--KWKDIEISDDEDETHPNID 224
++PI + L + K+FE+++ E + Q ++++S ++ + +D PN+D
Sbjct: 230 MDPITLEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLD 286
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 60 LEPINFFLNLLVKFKIFEYYQSE*LNQVSQTMVDYS--KWKDIEISDDEDETHPNID 224
++PI + L + K+FE+++ E + Q ++++S ++ + +D PN+D
Sbjct: 230 MDPITLEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLD 286
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 60 LEPINFFLNLLVKFKIFEYYQSE*LNQVSQTMVDYS--KWKDIEISDDEDETHPNID 224
++PI + L + K+FE+++ E + Q ++++S ++ + +D PN+D
Sbjct: 230 MDPITLEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLD 286
>Z30662-8|CAA83136.2| 278|Caenorhabditis elegans Hypothetical
protein T16H12.3a protein.
Length = 278
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 45 DFCEFLEPINFFLNLL 92
DFCE +EP+NF +N L
Sbjct: 250 DFCEIIEPVNFSVNFL 265
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 169 NGKISKFPTMKTRPIQTLIPHHCFDGGTR-PVWNAWKSDAARKRNWSKERKKTND 330
+G+I K T+ + T+IP F T V WK++A RKR +S KK ND
Sbjct: 213 DGRILKISTLINAIVSTIIPCFIFPIVTVFLVKELWKAEANRKRLFSS--KKVND 265
>AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine
receptor, class w protein143 protein.
Length = 365
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 169 NGKISKFPTMKTRPIQTLIPHHCFDGGTR-PVWNAWKSDAARKRNWSKERKKTND 330
+G I K T+ + T+IP F T V WK++A RKR +S KK ND
Sbjct: 213 DGMILKIYTLINSVVSTIIPCFIFPIVTVFLVKELWKAEANRKRLFSS--KKVND 265
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 336 TETRKKISEADADSPNLNSLKK 401
TET KK S+AD +S + +SLK+
Sbjct: 106 TETAKKASDADRESKSRSSLKR 127
>AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical
protein Y97E10AR.4 protein.
Length = 547
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 144 SQTMVDYSKWKDIEISDDEDETHPNIDTP 230
S+ D + + I++ DD+DE PNI P
Sbjct: 456 SEAFDDKDEQEVIDLDDDDDEPDPNIQQP 484
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 238 FDGGTRPVWNAWKSDAARKRNWSKERKKTNDV*PRPGKKYRK 363
FDG R + AW+ +ARK++ K++++ D+ GKK R+
Sbjct: 693 FDGYARVIQKAWRQFSARKQH-IKQKEQAADL--MYGKKERR 731
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 266 THGRATPRERGTGAKKERKPTTSNRDQEKNIGS*CRQP*SKFIKKDAS 409
+ R+ R R +ER+ NRD+++ S R P K +++ S
Sbjct: 15 SRSRSVERRRERSRSRERRDARKNRDEKEKRSSRSRSPRDKRDRRERS 62
>Z70310-2|CAA94367.1| 462|Caenorhabditis elegans Hypothetical
protein R11A8.2 protein.
Length = 462
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 84 NLLVKFKIFEYYQSE*LNQVSQTMVDYSKWKDIEISDDEDETHPNI 221
+LLV+F I E ++ L + +VD + D+ I DD TH NI
Sbjct: 347 DLLVRF-IDEDFKRGSLYEQKVRIVDVAGDNDVTIEDDRGNTHYNI 391
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 260 CGTHGRATPRERGTGAKKERKPT 328
CG G A P GTG K + KP+
Sbjct: 556 CGACGEARPGGSGTGPKSQPKPS 578
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 238 FDGGTRPVWNAWKSDAARKRNWSKERKKTNDV*PRPGKKYRK 363
FDG R + AW+ +ARK++ K++++ D+ GKK R+
Sbjct: 630 FDGYARVIQKAWRQFSARKQH-IKQKEQAADL--MYGKKERR 668
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,476
Number of Sequences: 27780
Number of extensions: 219511
Number of successful extensions: 761
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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