Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d16r
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.9  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   10.0 

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 489  PYLDRRLIAGELELGVLERNIESALYGGLQ-LQSDHSALHHLHAW 358
            P  D  L   E++ G+LE  +ES + G +  + +D S LH + A+
Sbjct: 1133 PMNDFSLSFSEIKGGILESPVESPMTGTISPIDADESVLHDIPAY 1177


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 429 IESALYGGLQLQSDHSALHHLHAWLQ 352
           I  +L GGL+L+ DH+  H L  +LQ
Sbjct: 428 IRISLTGGLRLEQDHACKHALPQFLQ 453


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 561 WLNVIIKLYFSAXXLLDQYHEAALRSN 641
           W +V+I ++F A  ++ +YH    + N
Sbjct: 28  WFSVLIPIFFIALIIIKRYHSCTYQKN 54


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 439 KNTQFKFSGDEPPVQVRPHP 498
           +NTQ   SG++PP Q  P+P
Sbjct: 569 RNTQTLSSGNQPPQQSGPNP 588


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 266 VTSFVSSEGCHVDIPS-GFIRPGHYLDWFKTVTG 168
           V + VSS+G  +D+PS G  +   + D+ K + G
Sbjct: 499 VITMVSSDGLRLDVPSRGLRKRFRHGDYVKVIAG 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,631
Number of Sequences: 5004
Number of extensions: 55896
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)