Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d16r
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548...    31   1.1  
10_01_0051 - 741031-741820,742998-743530,743616-743833,743941-74...    31   1.1  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    30   1.5  
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    30   1.9  

>11_04_0291 -
           15851647-15852252,15853995-15854136,15854666-15854881,
           15854957-15855052,15855147-15855259,15856516-15856727,
           15856842-15856939,15857066-15857186,15857291-15857508,
           15857657-15857837,15857919-15858207,15858303-15858367,
           15858480-15858591
          Length = 822

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +3

Query: 354 VAKRANGGGLNGRTEVVGHHTTQIRYSVQEHPVQVLRR*ASGPGTAPSAGDKSDIVVITI 533
           V  RA  GG+    EVVG+  T     + E  V ++R+   G   +PS+ D + + ++  
Sbjct: 34  VVTRATAGGVRNNLEVVGNAGTLQGMDIDELRV-IVRKQLQGVELSPSSYDTAWVAMVP- 91

Query: 534 LIRGSLQS 557
            ++GS QS
Sbjct: 92  -VQGSRQS 98


>10_01_0051 -
           741031-741820,742998-743530,743616-743833,743941-744043,
           744239-744318,744719-744725
          Length = 576

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 252 HERSDSYLCDLAVFIDHCQRTTAVTLTSGLRSVVVAKRANGGG 380
           +ERS   +  L   + H    TA  L SG+  VVVA    GGG
Sbjct: 493 YERSPGSMKSLGTSLAHLAVATANYLNSGVLGVVVAATTRGGG 535


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
 Frame = -3

Query: 407  AYNFSPTIQPSTI---CTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQ-------VGVTS 258
            A NF P +QPST     +L  N+ +Q+ CQ D      V  ++G  TQ       V V  
Sbjct: 1956 AQNFQPELQPSTSLFDASLESNNISQTDCQSDRA---VVFLQEGATTQQHLLDTGVVVDD 2012

Query: 257  FVSSEGCHVDIPSGFI 210
             V+ E  H + P+  I
Sbjct: 2013 IVAEEPSHSESPTYII 2028


>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 237 AAFAGHERSDSYLCDLAVFIDHCQRTTAVTLTSGLRSVVVAKRANGGGLNG 389
           AA +GHER  S   D A+ +   +    + + SGLRS  + +RA+G  + G
Sbjct: 99  AALSGHERVVSVFRDRALELHTTRSWDFLDVQSGLRSDRLGRRASGDVIIG 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,666
Number of Sequences: 37544
Number of extensions: 416807
Number of successful extensions: 1192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)