Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13d16f
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    46   2e-05
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    37   0.012
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   1.0  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   5.3  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
 Frame = +3

Query: 129 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC--TGLRVT---I 293
           +R+V G+E   G FP+  ++R  +T    + CGA+I+     +TAAHC     RV+   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRNKATKA--HHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 294 IVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRK-IEFNDYIQPIRL 470
           +V     N T      E   Y+    +      +  HDI +++     IEFN+Y QPI L
Sbjct: 83  VVGDWDNNQTDGN---EQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
 Frame = +3

Query: 132 RIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTG---LRVTIIVR 302
           R++ G E+S   +P+  +++++S +G  + CG ++I  N+ LTAAHC        +  VR
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113

Query: 303 AGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYIQPIRL 470
            G  + +  G     T    HP Y  N+     +D  ++     +  +   +PI L
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWY--NIGFPSSYDFAIMRIHPPVNTSTTARPICL 166


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 222 CGATIIHSNWGLTAAHC 272
           CGAT+I   W +TAAHC
Sbjct: 66  CGATVIDDFWLVTAAHC 82


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 PYQLSIRMVSTVGGVNA-CGATIIHSNWGLTAAHC 272
           P+ + IR+ +  G     CG T+I     LTAAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 339 FETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEFNDYI 455
           F+ T+ IN     E+++ V+ +   L+D  + I  N YI
Sbjct: 229 FKQTREINPERLKESVDKVEIYGTELVDLDKAINLNSYI 267


>Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical
           protein T20D3.3b protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 339 FETTKYINHPEYSENLNVVQPHDIGLIDFGRKIEF 443
           FE  + ++ PE S +L  +  ++  L+DFG +I+F
Sbjct: 67  FECAENLSSPETSISLQFLSYYESILVDFGDQIQF 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,821
Number of Sequences: 27780
Number of extensions: 248041
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)